RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 NGRNQ9NPE2 291 aaKnown RBP18.51■□□□□ 0.55
SNX1-208ENST00000559844 SF3B1O75533 1304 aaKnown RBP eCLIP18.51■□□□□ 0.554e-7■■■■■ 86.2
SNX1-208ENST00000559844 GABRDO14764 452 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 TRAPPC3O43617 180 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 GABBR2O75899 941 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 FGF18O76093 207 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 TTC4O95801 387 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 HPDP32754 393 aaPredicted RBP18.51■□□□□ 0.55
SNX1-208ENST00000559844 PPP2R2AP63151 447 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 ATP11AP98196 1134 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 GPS1Q13098 491 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 MORF4L2Q15014 288 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 LRIT3Q3SXY7 679 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 EFHC1Q5JVL4 640 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 LRRC31Q6UY01 552 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 KLHL23Q8NBE8 558 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 TIFAQ96CG3 184 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 SENP8Q96LD8 212 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 TMEM121Q9BTD3 319 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 GPR62Q9BZJ7 368 aa18.51■□□□□ 0.55
SNX1-208ENST00000559844 ZNF487B1APH4 448 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 MCF2LO15068 1137 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 MDM4O15151 490 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 RGS16O15492 202 aaPredicted RBP18.5■□□□□ 0.55
SNX1-208ENST00000559844 AGTP01019 485 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 PTPN1P18031 435 aaKnown RBP18.5■□□□□ 0.55
SNX1-208ENST00000559844 MDH1P40925 334 aaKnown RBP18.5■□□□□ 0.55
SNX1-208ENST00000559844 LHX1P48742 406 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 SCYL2Q6P3W7 929 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 TRAF3IP1Q8TDR0 691 aaPredicted RBP18.5■□□□□ 0.55
SNX1-208ENST00000559844 RSAD2Q8WXG1 361 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 SUSD3Q96L08 255 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 DUSP16Q9BY84 665 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 CERS4Q9HA82 394 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 CWC15Q9P013 229 aaKnown RBP18.5■□□□□ 0.55
SNX1-208ENST00000559844 RASGRF2O14827 1237 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 LCP1P13796 627 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 PAX3P23760 479 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 MAGOHP61326 146 aaKnown RBP18.5■□□□□ 0.55
SNX1-208ENST00000559844 ERVK-21P61565 698 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 DPYSL3Q14195 570 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 WSCD1Q658N2 575 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 B3GNT5Q9BYG0 378 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 ADAM7Q9H2U9 754 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 CNOT10Q9H9A5 744 aaKnown RBP18.5■□□□□ 0.55
SNX1-208ENST00000559844 SHOC2Q9UQ13 582 aa18.5■□□□□ 0.55
SNX1-208ENST00000559844 TLDC2A0PJX2 215 aa18.49■□□□□ 0.55
SNX1-208ENST00000559844 SRRM3A6NNA2 597 aaPredicted RBP18.49■□□□□ 0.55
SNX1-208ENST00000559844 C5orf67F2Z3F1 127 aa18.49■□□□□ 0.55
SNX1-208ENST00000559844 M0QZQ0 153 aa18.49■□□□□ 0.55
SNX1-208ENST00000559844 ZSCAN5DPP0CG00 497 aa18.49■□□□□ 0.55
SNX1-208ENST00000559844 EIF3EP60228 445 aaKnown RBP18.49■□□□□ 0.55
SNX1-208ENST00000559844 ELAVL2Q12926 359 aaKnown RBP18.49■□□□□ 0.55
SNX1-208ENST00000559844 FAM171A1Q5VUB5 890 aa18.49■□□□□ 0.55
SNX1-208ENST00000559844 PRUNE1Q86TP1 453 aa18.49■□□□□ 0.55
SNX1-208ENST00000559844 GLIS1Q8NBF1 620 aa18.49■□□□□ 0.55
SNX1-208ENST00000559844 CENPIQ92674 756 aaPredicted RBP18.49■□□□□ 0.55
SNX1-208ENST00000559844 SAMD11Q96NU1 681 aa18.49■□□□□ 0.55
SNX1-208ENST00000559844 RNF157Q96PX1 679 aa18.49■□□□□ 0.55
SNX1-208ENST00000559844 DDX23Q9BUQ8 820 aaKnown RBP18.49■□□□□ 0.55
SNX1-208ENST00000559844 VN1R3Q9BXE9 311 aa18.49■□□□□ 0.55
SNX1-208ENST00000559844 DDX43Q9NXZ2 648 aaKnown RBP18.49■□□□□ 0.55
SNX1-208ENST00000559844 NINJ2Q9NZG7 142 aa18.49■□□□□ 0.55
SNX1-208ENST00000559844 SMAPO00193 183 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 ACSL3O95573 720 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 IFNB1P01574 187 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 ODC1P11926 461 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 ETS1P14921 441 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 TGM2P21980 687 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 TKTP29401 623 aaKnown RBP18.48■□□□□ 0.55
SNX1-208ENST00000559844 NOMO1Q15155 1222 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 CEP57Q86XR8 500 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 FUKQ8N0W3 1084 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 KCTD13Q8WZ19 329 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 P3H4Q92791 437 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 B3GALT6Q96L58 329 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 C11orf84Q9BUA3 381 aaPredicted RBP18.48■□□□□ 0.55
SNX1-208ENST00000559844 SNRNP25Q9BV90 132 aaKnown RBP18.48■□□□□ 0.55
SNX1-208ENST00000559844 ALG13Q9NP73 1137 aaKnown RBP18.48■□□□□ 0.55
SNX1-208ENST00000559844 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP18.48■□□□□ 0.55
SNX1-208ENST00000559844 SAE1Q9UBE0 346 aaPredicted RBP18.48■□□□□ 0.55
SNX1-208ENST00000559844 TIMM13Q9Y5L4 95 aaPredicted RBP18.48■□□□□ 0.55
SNX1-208ENST00000559844 NPR3P17342 541 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 STIP1P31948 543 aaKnown RBP18.48■□□□□ 0.55
SNX1-208ENST00000559844 SKIDA1Q1XH10 827 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 ERMARDQ5T6L9 678 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 RNASEH2BQ5TBB1 312 aaKnown RBP18.48■□□□□ 0.55
SNX1-208ENST00000559844 DDX53Q86TM3 631 aaKnown RBP18.48■□□□□ 0.55
SNX1-208ENST00000559844 PIGZQ86VD9 579 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 FBXO22Q8NEZ5 403 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 UHMK1Q8TAS1 419 aaKnown RBP18.48■□□□□ 0.55
SNX1-208ENST00000559844 SPATA18Q8TC71 538 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 ARNTL2Q8WYA1 636 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 TTC25Q96NG3 672 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 SERPINB12Q96P63 405 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 RBM15Q96T37 977 aaKnown RBP eCLIP18.48■□□□□ 0.55
SNX1-208ENST00000559844 ZNF670Q9BS34 389 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 PHACTR1Q9C0D0 580 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 PCDHB8Q9UN66 801 aa18.48■□□□□ 0.55
SNX1-208ENST00000559844 EFEMP2O95967 443 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms