RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 SNX25Q9H3E2 840 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 NRDE2Q9H7Z3 1164 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 XAB2Q9HCS7 855 aaKnown RBP7.54□□□□□ -1.2
VPS13C-206ENST00000558338 ETNK2Q9NVF9 386 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 MKS1Q9NXB0 559 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 GDAP2Q9NXN4 497 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 GTF2IRD1Q9UHL9 959 aa7.54□□□□□ -1.2
VPS13C-206ENST00000558338 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 TCRBV7S3A2A0A539 114 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 TCRBV9S1A1TA0A576 114 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 A8MXQ7 604 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 BTBD19C9JJ37 291 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 SCAMP3O14828 347 aaKnown RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 PAPSS1O43252 624 aaPredicted RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 LPXNO60711 386 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 GPR32O75388 356 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 BANF1O75531 89 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 GCATO75600 419 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 WFS1O76024 890 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 RECQL4O94761 1208 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 STK10O94804 968 aaKnown RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 UNC5CO95185 931 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 IL1BP01584 269 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 DARSP14868 501 aaKnown RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 KCNE1P15382 129 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 CNTFP26441 200 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 HOXA11P31270 313 aaPredicted RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 FDFT1P37268 417 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 ARL4AP40617 200 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 PSMC4P43686 418 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 TAF6P49848 677 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 SERPINB9P50453 376 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 YWHAZP63104 245 aaKnown RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 CDK16Q00536 496 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 SLC18A2Q05940 514 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 MRPL58Q14197 206 aaKnown RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 SLC1A5Q15758 541 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 KIZQ2M2Z5 673 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 ALKAL1Q6UXT8 129 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 TBC1D1Q86TI0 1168 aaPredicted RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 JAZF1Q86VZ6 243 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 SLC26A11Q86WA9 606 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 ECHDC2Q86YB7 292 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 AGGF1Q8N302 714 aaeCLIP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 FITM2Q8N6M3 262 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 PQLC3Q8N755 202 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 C12orf29Q8N999 325 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 PCDH19Q8TAB3 1148 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 ZNF75CPQ92670 426 aaPredicted RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 CENPIQ92674 756 aaPredicted RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 INPP5DQ92835 1189 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 RMDN2Q96LZ7 410 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 SPOCK3Q9BQ16 436 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 WDR83Q9BRX9 315 aaKnown RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 C11orf84Q9BUA3 381 aaPredicted RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 TUBB6Q9BUF5 446 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 KATNAL1Q9BW62 490 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 C10orf88Q9H8K7 445 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 KIF9Q9HAQ2 790 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 USP29Q9HBJ7 922 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 ARHGEF3Q9NR81 526 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 FAM49BQ9NUQ9 324 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 TUBGCP4Q9UGJ1 667 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 HEY1Q9Y5J3 304 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 GOLGB1Q14789 3259 aaKnown RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 SF3B1O75533 1304 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 A0A1W2PPM1 405 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 MBLAC1A4D2B0 266 aaPredicted RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 IGF2BP3O00425 579 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 PIK3R2O00459 728 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 C2CD2LO14523 706 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 XPO1O14980 1071 aaKnown RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 DAB1O75553 588 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 GRAP2O75791 330 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 KRT38O76015 456 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 TGDSO95455 350 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 SNRPAP09012 282 aaKnown RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 SMIM10L2AP0DMW4 78 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 SMIM10L2BP0DMW5 78 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 CYP2C9P11712 490 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 PAX3P23760 479 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 PRKCHP24723 683 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 RBL1P28749 1068 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 APLP1P51693 650 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 NEK3P51956 506 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 HDAC4P56524 1084 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 GAD2Q05329 585 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 NAB1Q13506 487 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 EFTUD2Q15029 972 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 DBN1Q16643 649 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 PARP6Q2NL67 630 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 PREPLQ4J6C6 727 aaPredicted RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 XKR4Q5GH76 650 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 SH3PXD2AQ5TCZ1 1133 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 HEATR6Q6AI08 1181 aaKnown RBP7.53□□□□□ -1.2
VPS13C-206ENST00000558338 ASRGL1Q7L266 308 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 RPAINQ86UA6 219 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 LRRC6Q86X45 466 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 TOP6BLQ8N6T0 577 aa7.53□□□□□ -1.2
VPS13C-206ENST00000558338 APPL2Q8NEU8 664 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms