RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 CCDC127Q96BQ5 260 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 SMARCD1Q96GM5 515 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 SMOQ99835 787 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 MED10Q9BTT4 135 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 SDCBP2Q9H190 292 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 ITM2CQ9NQX7 267 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 OSER1Q9NX31 292 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 WDR35Q9P2L0 1181 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 NXF1Q9UBU9 619 aaKnown RBP8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 CCDC39Q9UFE4 941 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 HMGXB4Q9UGU5 601 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 EIF2B4Q9UI10 523 aaKnown RBP8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 KIF26BQ2KJY2 2108 aa8.63□□□□□ -1.03
CCDC88C-214ENST00000557507 ATMQ13315 3056 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 METTL12A8MUP2 240 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 CYP26A1O43174 497 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 TGFB1I1O43294 461 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 STAU1O95793 577 aaKnown RBP8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 IGLV3-19P01714 112 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 FAM163BP0C2L3 166 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 TNNI1P19237 187 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 PRKCHP24723 683 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 STAT6P42226 847 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 CSNK1EP49674 416 aaKnown RBP8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 COPAP53621 1224 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 MFAP3P55082 362 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 CYP24A1Q07973 514 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 ORC1Q13415 861 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 ENPP2Q13822 863 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 STARD3Q14849 445 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 PSMD6Q15008 389 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 PTPRNQ16849 979 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 GEN1Q17RS7 908 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 IL27RAQ6UWB1 636 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 SCUBE3Q8IX30 993 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 CADM4Q8NFZ8 388 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 PIP4K2CQ8TBX8 421 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 PLEKHO2Q8TD55 490 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 RHBDD1Q8TEB9 315 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 DCBLD2Q96PD2 775 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 CDC6Q99741 560 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 NMUR1Q9HB89 426 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 CYLDQ9NQC7 956 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 AGPAT3Q9NRZ7 376 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 THAP10Q9P2Z0 257 aaPredicted RBP8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 LSM7Q9UK45 103 aaKnown RBP8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 FBXO10Q9UK96 956 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 NUDT5Q9UKK9 219 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 SMC3Q9UQE7 1217 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 PCDHGB2Q9Y5G2 931 aa8.62□□□□□ -1.03
CCDC88C-214ENST00000557507 CLIC2O15247 247 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 PENKP01210 267 aaPredicted RBP8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 ACO1P21399 889 aaKnown RBP8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 ITPKBP27987 946 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 TXLNAP40222 546 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 ABCG1P45844 678 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 CASP4P49662 377 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 CYP2J2P51589 502 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 CLDN6P56747 220 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 MAP3K7CLP57077 242 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 TRPC3Q13507 836 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 ZNF234Q14588 700 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 SMAD1Q15797 465 aaKnown RBP8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 KIF19Q2TAC6 998 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 CCDC157Q569K6 752 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 FYB2Q5VWT5 728 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 LARP1BQ659C4 914 aaKnown RBP8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 FAM173BQ6P4H8 233 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 DHRS13Q6UX07 377 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 EPM2AIP1Q7L775 607 aaPredicted RBP8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 ACOT1Q86TX2 421 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 FAM124AQ86V42 546 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 TMPRSS6Q8IU80 811 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 CCDC65Q8IXS2 484 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 GALNT15Q8N3T1 639 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 RBBP8NLQ8NC74 664 aaPredicted RBP8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 SLC2A14Q8TDB8 520 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 SORCS1Q8WY21 1168 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 SNX19Q92543 992 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 JAKMIP2Q96AA8 810 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 SIPA1Q96FS4 1042 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 UBL7Q96S82 380 aaPredicted RBP8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 PANK2Q9BZ23 570 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 C6orf106Q9H6K1 298 aaPredicted RBP8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 KIAA1586Q9HCI6 787 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 CSNK1G1Q9HCP0 422 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 TLR8Q9NR97 1041 aaKnown RBP8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 FAM49BQ9NUQ9 324 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 COMMD8Q9NX08 183 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 SLC27A6Q9Y2P4 619 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 SRPRBQ9Y5M8 271 aaKnown RBP8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 SNX11Q9Y5W9 270 aa8.61□□□□□ -1.03
CCDC88C-214ENST00000557507 A0A1W2PQH9 124 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 VPS37CA5D8V6 355 aaPredicted RBP8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 HHLA1C9JL84 531 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 H0Y8X5 98 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 PLK4O00444 970 aa8.6□□□□□ -1.03
CCDC88C-214ENST00000557507 KCNK3O14649 394 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms