RNA–Protein interactions for RNA: ENST00000557076.5

SCFD1-223, Transcript of sec1 family domain containing 1, human

TSL 3

Gene SCFD1, Length 743 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-223	ENST00000557076	ELF1	P32519	619 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	MLH1	P40692	756 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	CCR2	P41597	374 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	PXN	P49023	591 aa	Predicted RBP	5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	POU5F1B	Q06416	359 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	GRIK3	Q13003	919 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	SLC9A5	Q14940	896 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	PTPA	Q15257	358 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	UAP1L1	Q3KQV9	507 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	ANKRD45	Q5TZF3	282 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	NOTUM	Q6P988	496 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	UNC5A	Q6ZN44	842 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	HEATR3	Q7Z4Q2	680 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	YAF2	Q8IY57	180 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	TCEAL8	Q8IYN2	117 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	FANCB	Q8NB91	859 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	LEMD2	Q8NC56	503 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	RDM1	Q8NG50	284 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	NCOA7	Q8NI08	942 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	GIPC2	Q8TF65	315 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	PRPF31	Q8WWY3	499 aa	Known RBP	5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	RABGGTA	Q92696	567 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	PEX11G	Q96HA9	241 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	ZNF512	Q96ME7	567 aa	Predicted RBP	5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	NLRP4	Q96MN2	994 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	TMEM209	Q96SK2	561 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	RIT2	Q99578	217 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	EIF2A	Q9BY44	585 aa	Known RBP	5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	CSRNP2	Q9H175	543 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	MINDY3	Q9H8M7	445 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	MAFF	Q9ULX9	164 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	PLA2G2D	Q9UNK4	145 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	ZNF451	Q9Y4E5	1061 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	HES2	Q9Y543	173 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	COL4A3BP	Q9Y5P4	624 aa		5.2	□□□□□ -1.58
SCFD1-223	ENST00000557076	NOTCH2	Q04721	2471 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	MGA	Q8IWI9	3026 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	ZMYM2	Q9UBW7	1377 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	MYH15	Q9Y2K3	1946 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	GOLGA4	Q13439	2230 aa	Known RBP	5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	SPAAR	A0A1B0GVQ0	90 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	hCG_1642624	A0A1W2PR95	340 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	SLC38A8	A6NNN8	435 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076		J3QKU1	62 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	TRDMT1	O14717	391 aa	Known RBP	5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	NOBOX	O60393	691 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	LRG1	P02750	347 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	MC3R	P41968	323 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	LIFR	P42702	1097 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	SOX9	P48436	509 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	ADCY7	P51828	1080 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	JAK3	P52333	1124 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	EPHA5	P54756	1037 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	NAPA	P54920	295 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	LAMTOR4	Q0VGL1	99 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	GRSF1	Q12849	480 aa	Known RBP eCLIP	5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	TUSC3	Q13454	348 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	PON2	Q15165	354 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	UGCG	Q16739	394 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	MTERF2	Q49AM1	385 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	ARHGAP29	Q52LW3	1261 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	USP39	Q53GS9	565 aa	Known RBP	5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	PRR16	Q569H4	304 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	TMEM196	Q5HYL7	178 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	C20orf194	Q5TEA3	1177 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	PMS2CL	Q68D20	193 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	WWC2	Q6AWC2	1192 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	IQCE	Q6IPM2	695 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	SLC8B1	Q6J4K2	584 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	ANKS3	Q6ZW76	656 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	TMTC3	Q6ZXV5	915 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	PDZD4	Q76G19	769 aa	Predicted RBP	5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	RALYL	Q86SE5	291 aa	Known RBP	5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	FERMT3	Q86UX7	667 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	ARID3B	Q8IVW6	561 aa	Predicted RBP	5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	PSPC1	Q8WXF1	523 aa	Known RBP	5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	CPA5	Q8WXQ8	436 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	ADAMTS14	Q8WXS8	1223 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	PGBD1	Q96JS3	809 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	LRRC3B	Q96PB8	259 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	PAAF1	Q9BRP4	392 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	OBP2A	Q9NY56	170 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	NTM	Q9P121	344 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	WHRN	Q9P202	907 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	MTRR	Q9UBK8	725 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	TPCN1	Q9ULQ1	816 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	SLC12A7	Q9Y666	1083 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076	CDY1	Q9Y6F8	540 aa		5.19	□□□□□ -1.58
SCFD1-223	ENST00000557076		A0A1B0GUA9	196 aa		5.18	□□□□□ -1.58
SCFD1-223	ENST00000557076	PATE3	B3GLJ2	98 aa		5.18	□□□□□ -1.58
SCFD1-223	ENST00000557076		E7EWF7	191 aa		5.18	□□□□□ -1.58
SCFD1-223	ENST00000557076	hCG_1984214	I3L0E3	225 aa		5.18	□□□□□ -1.58
SCFD1-223	ENST00000557076	PRRG1	O14668	218 aa		5.18	□□□□□ -1.58
SCFD1-223	ENST00000557076	DCLK1	O15075	740 aa		5.18	□□□□□ -1.58
SCFD1-223	ENST00000557076	ARHGAP6	O43182	974 aa		5.18	□□□□□ -1.58
SCFD1-223	ENST00000557076	TRAPPC3	O43617	180 aa		5.18	□□□□□ -1.58
SCFD1-223	ENST00000557076	TSPAN1	O60635	241 aa		5.18	□□□□□ -1.58
SCFD1-223	ENST00000557076	ERLIN2	O94905	339 aa		5.18	□□□□□ -1.58
SCFD1-223	ENST00000557076	APBB3	O95704	486 aa		5.18	□□□□□ -1.58
SCFD1-223	ENST00000557076	PRB1	P04280	392 aa		5.18	□□□□□ -1.58

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