RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 GTF3C4Q9UKN8 822 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 ARHGAP26Q9UNA1 814 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 SNX9Q9Y5X1 595 aa10.66□□□□□ -0.7
SCFD1-220ENST00000556486 NFATC1O95644 943 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 STAT6P42226 847 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 PDE6CP51160 858 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 RACK1P63244 317 aaKnown RBP10.65□□□□□ -0.7
SCFD1-220ENST00000556486 MYO1EQ12965 1108 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 KCNB1Q14721 858 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 DUOXA1Q1HG43 343 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 ZNF394Q53GI3 561 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 CCNI2Q6ZMN8 369 aaPredicted RBP10.65□□□□□ -0.7
SCFD1-220ENST00000556486 C4orf50Q6ZRC1 276 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 STXBP4Q6ZWJ1 553 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 SLCO6A1Q86UG4 719 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 OSTM1Q86WC4 334 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 SPATA2LQ8IUW3 424 aaPredicted RBP10.65□□□□□ -0.7
SCFD1-220ENST00000556486 WDR49Q8IV35 697 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 SLC41A1Q8IVJ1 513 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 CCDC65Q8IXS2 484 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 SYCP3Q8IZU3 236 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 FSIP1Q8NA03 581 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 CCDC26Q8TAB7 109 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 HSPA12BQ96MM6 686 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 USP28Q96RU2 1077 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 TTLL2Q9BWV7 592 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 SLC6A17Q9H1V8 727 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 ZSCAN16Q9H4T2 348 aaPredicted RBP10.65□□□□□ -0.7
SCFD1-220ENST00000556486 POLMQ9NP87 494 aaPredicted RBP10.65□□□□□ -0.7
SCFD1-220ENST00000556486 PANK4Q9NVE7 773 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 FAM13BQ9NYF5 915 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 TBC1D7Q9P0N9 293 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 CDH9Q9ULB4 789 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 CYP8B1Q9UNU6 501 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 MTMR6Q9Y217 621 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 APC2O95996 2303 aa10.65□□□□□ -0.7
SCFD1-220ENST00000556486 SHROOM3Q8TF72 1996 aa10.65□□□□□ -0.71
SCFD1-220ENST00000556486 PTPRJQ12913 1337 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 A6NHS1 94 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 ZNF233A6NK53 670 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 UPK3BL1B0FP48 263 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 UPK3BL2E5RIL1 263 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 LEFTY2O00292 366 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 EIF3DO15371 548 aaKnown RBP eCLIP10.64□□□□□ -0.71
SCFD1-220ENST00000556486 CPNE3O75131 537 aaKnown RBP10.64□□□□□ -0.71
SCFD1-220ENST00000556486 KAT7O95251 611 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 OLFM2O95897 454 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 RPLP1P05386 114 aaKnown RBP10.64□□□□□ -0.71
SCFD1-220ENST00000556486 SERPINF2P08697 491 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 TMEM191BP0C7N4 346 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 IDEP14735 1019 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 HDCP19113 662 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 WARSP23381 471 aaKnown RBP10.64□□□□□ -0.71
SCFD1-220ENST00000556486 MAOBP27338 520 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 HOXD13P35453 343 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 PPP3CCP48454 512 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 SNRPFP62306 86 aaKnown RBP10.64□□□□□ -0.71
SCFD1-220ENST00000556486 NOP14P78316 857 aaKnown RBP10.64□□□□□ -0.71
SCFD1-220ENST00000556486 ARID5AQ03989 594 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 ZNF33AQ06730 810 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 DUOXA2Q1HG44 320 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 LMBRD2Q68DH5 695 aaPredicted RBP10.64□□□□□ -0.71
SCFD1-220ENST00000556486 FAM173BQ6P4H8 233 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 EPM2AIP1Q7L775 607 aaPredicted RBP10.64□□□□□ -0.71
SCFD1-220ENST00000556486 NAXDQ8IW45 347 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 NAT16Q8N8M0 369 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 OR5B17Q8NGF7 314 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 ADAMTS14Q8WXS8 1223 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 HPDLQ96IR7 371 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 ANKRD36BP1Q96IX9 119 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 PNKPQ96T60 521 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 TRIM9Q9C026 710 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 LRRC27Q9C0I9 530 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 CRTAC1Q9NQ79 661 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 ARHGEF4Q9NR80 690 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 TOR4AQ9NXH8 423 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 EHD2Q9NZN4 543 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 CALCOCO1Q9P1Z2 691 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 PCDHGB7Q9Y5F8 929 aa10.64□□□□□ -0.71
SCFD1-220ENST00000556486 MYO18AQ92614 2054 aaKnown RBP10.64□□□□□ -0.71
SCFD1-220ENST00000556486 FAM149AA5PLN7 773 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 GOLGA8IPA6NC78 632 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 GOLGA8JA6NMD2 632 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 TRIM24O15164 1050 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 AP5Z1O43299 807 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 PPP6R2O75170 966 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 TACC1O75410 805 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 PRPF6O94906 941 aaKnown RBP10.63□□□□□ -0.71
SCFD1-220ENST00000556486 APODP05090 189 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 KRT19P08727 400 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 GABRG2P18507 467 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 LMO2P25791 158 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 SLC7A9P82251 487 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 MRPS21P82921 87 aaKnown RBP10.63□□□□□ -0.71
SCFD1-220ENST00000556486 CYP4F3Q08477 520 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 DHCR24Q15392 516 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 PLEKHG6Q3KR16 790 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 CCDC157Q569K6 752 aa10.63□□□□□ -0.71
SCFD1-220ENST00000556486 PEAR1Q5VY43 1037 aaPredicted RBP10.63□□□□□ -0.71
SCFD1-220ENST00000556486 DENND5BQ6ZUT9 1274 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms