RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 ITGA1P56199 1179 aa11.02□□□□□ -0.64
ACTN1-216ENST00000556083 ITPK1Q13572 414 aa11.02□□□□□ -0.64
ACTN1-216ENST00000556083 SLC29A2Q14542 456 aa11.02□□□□□ -0.64
ACTN1-216ENST00000556083 PAGE2BQ5JRK9 111 aa11.02□□□□□ -0.64
ACTN1-216ENST00000556083 OVOS1Q6IE37 1185 aa11.02□□□□□ -0.64
ACTN1-216ENST00000556083 NYAP1Q6ZVC0 841 aa11.02□□□□□ -0.64
ACTN1-216ENST00000556083 CCDC60Q8IWA6 550 aaPredicted RBP11.02□□□□□ -0.64
ACTN1-216ENST00000556083 C4orf33Q8N1A6 199 aa11.02□□□□□ -0.64
ACTN1-216ENST00000556083 SVOPQ8N4V2 548 aa11.02□□□□□ -0.64
ACTN1-216ENST00000556083 MCOLN3Q8TDD5 553 aa11.02□□□□□ -0.64
ACTN1-216ENST00000556083 HSFY1Q96LI6 401 aa11.02□□□□□ -0.64
ACTN1-216ENST00000556083 THUMPD3Q9BV44 507 aaKnown RBP11.02□□□□□ -0.64
ACTN1-216ENST00000556083 APOL5Q9BWW9 433 aa11.02□□□□□ -0.64
ACTN1-216ENST00000556083 ELOVL6Q9H5J4 265 aa11.02□□□□□ -0.64
ACTN1-216ENST00000556083 CISHQ9NSE2 258 aa11.02□□□□□ -0.64
ACTN1-216ENST00000556083 PRG3Q9Y2Y8 225 aaPredicted RBP11.02□□□□□ -0.64
ACTN1-216ENST00000556083 RAMP2O60895 175 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 ERVK-10P10266 1014 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 SERPINB1P30740 379 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 HOXA10P31260 410 aaPredicted RBP11.02□□□□□ -0.65
ACTN1-216ENST00000556083 HIRAP54198 1017 aaPredicted RBP11.02□□□□□ -0.65
ACTN1-216ENST00000556083 TRIM71Q2Q1W2 868 aaKnown RBP11.02□□□□□ -0.65
ACTN1-216ENST00000556083 CDKAL1Q5VV42 579 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 FAM45BPQ6NSW5 357 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 GPC2Q8N158 579 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 NUP93Q8N1F7 819 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 UBA3Q8TBC4 463 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 SLC5A5Q92911 643 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 COMMD8Q9NX08 183 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 TAS2R13Q9NYV9 303 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 TRPV2Q9Y5S1 764 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 SF3B1O75533 1304 aaKnown RBP eCLIP11.02□□□□□ -0.65
ACTN1-216ENST00000556083 DIP2CQ9Y2E4 1556 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 FOXN3O00409 490 aaPredicted RBP11.02□□□□□ -0.65
ACTN1-216ENST00000556083 GHRP10912 638 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 GYS1P13807 737 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 HPGDP15428 266 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 VCAM1P19320 739 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 PTENP60484 403 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 YWHAZP63104 245 aaKnown RBP11.02□□□□□ -0.65
ACTN1-216ENST00000556083 HEXDCQ8WVB3 486 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 ATXN7L3BQ96GX2 97 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 CPNE1Q99829 537 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 CCT7Q99832 543 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 YIPF2Q9BWQ6 316 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 MLXIPLQ9NP71 852 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.02□□□□□ -0.65
ACTN1-216ENST00000556083 PMPCBO75439 489 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 DDHD2O94830 711 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 PGAM1P18669 254 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 IRAK1P51617 712 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 RTP1P59025 263 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 CHMP1BQ7LBR1 199 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 ARID3BQ8IVW6 561 aaPredicted RBP11.02□□□□□ -0.65
ACTN1-216ENST00000556083 REPS2Q8NFH8 660 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 ANKRD7Q92527 254 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 ZIM3Q96PE6 472 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 TAGLN3Q9UI15 199 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 NR2E3Q9Y5X4 410 aa11.02□□□□□ -0.65
ACTN1-216ENST00000556083 NFASCO94856 1347 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 FAM220BPB1ANY3 271 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 ACADMP11310 421 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 CPA3P15088 417 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 MSH3P20585 1137 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 HALP42357 657 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 TRIP4Q15650 581 aaPredicted RBP11.01□□□□□ -0.65
ACTN1-216ENST00000556083 USP39Q53GS9 565 aaKnown RBP11.01□□□□□ -0.65
ACTN1-216ENST00000556083 TTC33Q6PID6 262 aaPredicted RBP11.01□□□□□ -0.65
ACTN1-216ENST00000556083 MTSS1LQ765P7 747 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 CENPLQ8N0S6 344 aaPredicted RBP11.01□□□□□ -0.65
ACTN1-216ENST00000556083 BLOC1S5Q8TDH9 187 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 TMEM159Q96B96 161 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 THAP2Q9H0W7 228 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 ZBTB12Q9Y330 459 aaPredicted RBP11.01□□□□□ -0.65
ACTN1-216ENST00000556083 ADAMTS13Q76LX8 1427 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 CPS1P31327 1500 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 SLC12A8A0AV02 714 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 PSMD12O00232 456 aaPredicted RBP11.01□□□□□ -0.65
ACTN1-216ENST00000556083 CCR3P51677 355 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 HERVK_113P62684 666 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 MTF1Q14872 753 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 KYAT3Q6YP21 454 aaKnown RBP11.01□□□□□ -0.65
ACTN1-216ENST00000556083 C18orf25Q96B23 403 aaPredicted RBP11.01□□□□□ -0.65
ACTN1-216ENST00000556083 RUSC1Q9BVN2 902 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 INO80Q9ULG1 1556 aaPredicted RBP11.01□□□□□ -0.65
ACTN1-216ENST00000556083 PLA2G6O60733 806 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 UPP2O95045 317 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 SERPINE1P05121 402 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 ANXA6P08133 673 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 HSD17B3P37058 310 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 TBX4P57082 545 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 OTUD4Q01804 1114 aaKnown RBP11.01□□□□□ -0.65
ACTN1-216ENST00000556083 CYP51A1Q16850 503 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 OLFML2BQ68BL8 750 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 INTS5Q6P9B9 1019 aaKnown RBP11.01□□□□□ -0.65
ACTN1-216ENST00000556083 ULK2Q8IYT8 1036 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 OR56A4Q8NGH8 313 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 NMRK2Q9NPI5 230 aa11.01□□□□□ -0.65
ACTN1-216ENST00000556083 DDX28Q9NUL7 540 aaKnown RBP11.01□□□□□ -0.65
ACTN1-216ENST00000556083 PSME2Q9UL46 239 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms