RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 TSG101Q99816 390 aa6.82□□□□□ -1.32
SCFD1-212ENST00000554486 NAT10Q9H0A0 1025 aaKnown RBP6.82□□□□□ -1.32
SCFD1-212ENST00000554486 CDT1Q9H211 546 aa6.82□□□□□ -1.32
SCFD1-212ENST00000554486 TMX1Q9H3N1 280 aa6.82□□□□□ -1.32
SCFD1-212ENST00000554486 PCIF1Q9H4Z3 704 aa6.82□□□□□ -1.32
SCFD1-212ENST00000554486 SAMSN1Q9NSI8 373 aaKnown RBP6.82□□□□□ -1.32
SCFD1-212ENST00000554486 AGPAT5Q9NUQ2 364 aa6.82□□□□□ -1.32
SCFD1-212ENST00000554486 HSPBP1Q9NZL4 362 aa6.82□□□□□ -1.32
SCFD1-212ENST00000554486 SAMD15Q9P1V8 674 aa6.82□□□□□ -1.32
SCFD1-212ENST00000554486 CGNQ9P2M7 1197 aaKnown RBP6.82□□□□□ -1.32
SCFD1-212ENST00000554486 PADI3Q9ULW8 664 aa6.82□□□□□ -1.32
SCFD1-212ENST00000554486 COA3Q9Y2R0 106 aaPredicted RBP6.82□□□□□ -1.32
SCFD1-212ENST00000554486 NFE2L3Q9Y4A8 694 aa6.82□□□□□ -1.32
SCFD1-212ENST00000554486 MICAL3Q7RTP6 2002 aa6.82□□□□□ -1.32
SCFD1-212ENST00000554486 TTC3P53804 2025 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 LTBP2Q14767 1821 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 GOLGA8IPA6NC78 632 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 GOLGA8JA6NMD2 632 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 SMTNL1A8MU46 457 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 N4BP3O15049 544 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 OGTO15294 1046 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 DGKIO75912 1065 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 AKAP3O75969 853 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 TIMP1P01033 207 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 CXCL10P02778 98 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 HARSP12081 509 aaKnown RBP6.81□□□□□ -1.32
SCFD1-212ENST00000554486 ZNF18P17022 549 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 POU3F3P20264 500 aaPredicted RBP6.81□□□□□ -1.32
SCFD1-212ENST00000554486 NR2F2P24468 414 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 RPL13P26373 211 aaKnown RBP6.81□□□□□ -1.32
SCFD1-212ENST00000554486 VIPR1P32241 457 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 CASP4P49662 377 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 CYP2J2P51589 502 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 RBM10P98175 930 aaKnown RBP6.81□□□□□ -1.32
SCFD1-212ENST00000554486 ADAM9Q13443 819 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 MYBPC2Q14324 1141 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 NOLC1Q14978 699 aaKnown RBP eCLIP6.81□□□□□ -1.32
SCFD1-212ENST00000554486 NR1I3Q14994 352 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 ZNF568Q3ZCX4 644 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 TMEM177Q53S58 311 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 ZBTB41Q5SVQ8 909 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 STEAP3Q658P3 488 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 SLFN12LQ6IEE8 588 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 NOTUMQ6P988 496 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 CRELD2Q6UXH1 353 aaPredicted RBP6.81□□□□□ -1.32
SCFD1-212ENST00000554486 FILIP1Q7Z7B0 1213 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 CILP2Q8IUL8 1156 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 CSGALNACT2Q8N6G5 542 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 USP38Q8NB14 1042 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 UHMK1Q8TAS1 419 aaKnown RBP6.81□□□□□ -1.32
SCFD1-212ENST00000554486 SEC14L1Q92503 715 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 SAAL1Q96ER3 474 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 CCDC51Q96ER9 411 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 BORCS6Q96GS4 357 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 ORAI3Q9BRQ5 295 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 EIF2AQ9BY44 585 aaKnown RBP6.81□□□□□ -1.32
SCFD1-212ENST00000554486 FAM126AQ9BYI3 521 aaPredicted RBP6.81□□□□□ -1.32
SCFD1-212ENST00000554486 IFIH1Q9BYX4 1025 aaKnown RBP6.81□□□□□ -1.32
SCFD1-212ENST00000554486 THAP9Q9H5L6 903 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 ANKFY1Q9P2R3 1169 aa6.81□□□□□ -1.32
SCFD1-212ENST00000554486 AGO2Q9UKV8 859 aaKnown RBP6.81□□□□□ -1.32
SCFD1-212ENST00000554486 PIN4Q9Y237 131 aaKnown RBP6.81□□□□□ -1.32
SCFD1-212ENST00000554486 FSD2A1L4K1 749 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 BECN2A8MW95 431 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 MAN2B1O00754 1011 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 HGSO14964 777 aaPredicted RBP6.8□□□□□ -1.32
SCFD1-212ENST00000554486 KIAA0391O15091 583 aaKnown RBP6.8□□□□□ -1.32
SCFD1-212ENST00000554486 CETN3O15182 167 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 CLDN3O15551 220 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 EXTL3O43909 919 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 EXOC3O60645 756 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 PARNO95453 639 aaKnown RBP6.8□□□□□ -1.32
SCFD1-212ENST00000554486 NPTXRO95502 500 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 ADRB2P07550 413 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 MCF2P10911 925 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 ATP1A3P13637 1013 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 RFC2P35250 354 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 TNFSF9P41273 254 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 MATR3P43243 847 aaKnown RBP eCLIP6.8□□□□□ -1.321e-6■■■■□ 25.6
SCFD1-212ENST00000554486 ACOT2P49753 483 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 NCBP1Q09161 790 aaKnown RBP6.8□□□□□ -1.32
SCFD1-212ENST00000554486 PDCD11Q14690 1871 aaKnown RBP6.8□□□□□ -1.32
SCFD1-212ENST00000554486 GPR19Q15760 415 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 TPD52L1Q16890 204 aaPredicted RBP6.8□□□□□ -1.32
SCFD1-212ENST00000554486 RALGAPA2Q2PPJ7 1873 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 DCAF4L1Q3SXM0 396 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 ZNF385BQ569K4 471 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 HSP90AA4PQ58FG1 418 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 PIK3R6Q5UE93 754 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 MFSD5Q6N075 450 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 SLC27A1Q6PCB7 646 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 DEFB128Q7Z7B8 93 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 RTN4RL1Q86UN2 441 aaPredicted RBP6.8□□□□□ -1.32
SCFD1-212ENST00000554486 DCP2Q8IU60 420 aaKnown RBP6.8□□□□□ -1.32
SCFD1-212ENST00000554486 CBWD2Q8IUF1 395 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 CISD2Q8N5K1 135 aaKnown RBP6.8□□□□□ -1.32
SCFD1-212ENST00000554486 XXYLT1Q8NBI6 393 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 DBF4BQ8NFT6 615 aa6.8□□□□□ -1.32
SCFD1-212ENST00000554486 NOC3LQ8WTT2 800 aaKnown RBP6.8□□□□□ -1.32
SCFD1-212ENST00000554486 TSPAN17Q96FV3 270 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms