RNA–Protein interactions for RNA: ENST00000554429.5

PRPF39-206, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,977 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-206ENST00000554429 IL1RAPL1Q9NZN1 696 aa2.85□□□□□ -1.95
PRPF39-206ENST00000554429 ZNF215Q9UL58 517 aaPredicted RBP2.85□□□□□ -1.95
PRPF39-206ENST00000554429 PCDHA2Q9Y5H9 948 aa2.85□□□□□ -1.95
PRPF39-206ENST00000554429 UBIAD1Q9Y5Z9 338 aa2.85□□□□□ -1.95
PRPF39-206ENST00000554429 IGSF9BQ9UPX0 1349 aa2.85□□□□□ -1.95
PRPF39-206ENST00000554429 NID2Q14112 1375 aa2.85□□□□□ -1.95
PRPF39-206ENST00000554429 ARID2Q68CP9 1835 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 MYH9P35579 1960 aaKnown RBP2.84□□□□□ -1.95
PRPF39-206ENST00000554429 TECTAO75443 2155 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 NCOR1O75376 2440 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 GIMAP1-GIMAP5A0A087WTJ2 511 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 A0A087WV62 115 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 SMIM35A0A1B0GVV1 85 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 C16orf96A6NNT2 1141 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 HNRNPCL2B2RXH8 293 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 EIF3CLB5ME19 914 aaKnown RBP2.84□□□□□ -1.95
PRPF39-206ENST00000554429 GCOM1H8Y6P7 765 aaPredicted RBP2.84□□□□□ -1.95
PRPF39-206ENST00000554429 DDX3XO00571 662 aaKnown RBP eCLIP2.84□□□□□ -1.95
PRPF39-206ENST00000554429 NDUFAB1O14561 156 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 ENC1O14682 589 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 HDAC3O15379 428 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 TEX28O15482 410 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 HNRNPCL1O60812 293 aaKnown RBP2.84□□□□□ -1.95
PRPF39-206ENST00000554429 FBXO24O75426 580 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 REC8O95072 547 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 GGPS1O95749 300 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 OLFM2O95897 454 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 LTFP02788 710 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 H2AFB1P0C5Y9 115 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 H2AFB2P0C5Z0 115 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 POLR2MP0CAP2 368 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 STAG3L1P0CL83 205 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 KCNA5P22460 613 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 CES1P23141 567 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 TAGLN2P37802 199 aaKnown RBP2.84□□□□□ -1.95
PRPF39-206ENST00000554429 MTIF2P46199 727 aaKnown RBP2.84□□□□□ -1.95
PRPF39-206ENST00000554429 NEK4P51957 841 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 BLVRAP53004 296 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 MAPK10P53779 464 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 SLC12A3P55017 1021 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 SNAP25P60880 206 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 MRPS9P82933 396 aaKnown RBP2.84□□□□□ -1.95
PRPF39-206ENST00000554429 TMEM62Q0P6H9 643 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 C19orf57Q0VDD7 668 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 SLC14A1Q13336 389 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 SNX1Q13596 522 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 CAMK4Q16566 473 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 TIGD6Q17RP2 521 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 USP39Q53GS9 565 aaKnown RBP2.84□□□□□ -1.95
PRPF39-206ENST00000554429 FAM47CQ5HY64 1035 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 ZCCHC12Q6PEW1 402 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 C11orf88Q6PI97 169 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 IL27RAQ6UWB1 636 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 B3GNT6Q6ZMB0 384 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 NCCRP1Q6ZVX7 275 aaPredicted RBP2.84□□□□□ -1.95
PRPF39-206ENST00000554429 TMC6Q7Z403 805 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 RSPH3Q86UC2 560 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 ZNF589Q86UQ0 364 aaPredicted RBP2.84□□□□□ -1.95
PRPF39-206ENST00000554429 CHD1LQ86WJ1 897 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 CMIPQ8IY22 773 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 OR2C3Q8N628 320 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 ZSWIM2Q8NEG5 633 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 TRIM58Q8NG06 486 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 GPT2Q8TD30 523 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 ATP6V0A1Q93050 837 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 ACSF2Q96CM8 615 aaPredicted RBP2.84□□□□□ -1.95
PRPF39-206ENST00000554429 GIMAP5Q96F15 307 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 VCPIP1Q96JH7 1222 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 CABS1Q96KC9 395 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 EXOC2Q96KP1 924 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 RUFY1Q96T51 708 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 EIF3CQ99613 913 aaKnown RBP2.84□□□□□ -1.95
PRPF39-206ENST00000554429 BCL7BQ9BQE9 202 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 KAT14Q9H8E8 782 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 CERS4Q9HA82 394 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 ERVK-5Q9HDB9 667 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 WDR6Q9NNW5 1121 aaKnown RBP2.84□□□□□ -1.95
PRPF39-206ENST00000554429 ARFGAP3Q9NP61 516 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 RGS18Q9NS28 235 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 KRT84Q9NSB2 600 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 TBC1D14Q9P2M4 693 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 VPS28Q9UK41 221 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 CROTQ9UKG9 612 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 ANKRD6Q9Y2G4 727 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 C15orf41Q9Y2V0 281 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 PCDHB12Q9Y5F1 795 aa2.84□□□□□ -1.95
PRPF39-206ENST00000554429 C2orf16Q68DN1 1984 aa2.84□□□□□ -1.96
PRPF39-206ENST00000554429 A0A1W2PPL8 197 aa2.84□□□□□ -1.96
PRPF39-206ENST00000554429 GSTTP1A0A1W2PQM5 241 aa2.84□□□□□ -1.96
PRPF39-206ENST00000554429 FAM86C2PA6NEL3 165 aa2.84□□□□□ -1.96
PRPF39-206ENST00000554429 LRRC14BA6NHZ5 514 aa2.84□□□□□ -1.96
PRPF39-206ENST00000554429 MAPK13O15264 365 aa2.84□□□□□ -1.96
PRPF39-206ENST00000554429 ATXN7O15265 892 aaPredicted RBP2.84□□□□□ -1.96
PRPF39-206ENST00000554429 YEATS4O95619 227 aa2.84□□□□□ -1.96
PRPF39-206ENST00000554429 POP4O95707 220 aaKnown RBP2.84□□□□□ -1.96
PRPF39-206ENST00000554429 GLP2RO95838 553 aa2.84□□□□□ -1.96
PRPF39-206ENST00000554429 SNRNP70P08621 437 aaKnown RBP2.84□□□□□ -1.96
PRPF39-206ENST00000554429 DHRS4L1P0CG22 281 aa2.84□□□□□ -1.96
PRPF39-206ENST00000554429 GSPT1P15170 499 aaKnown RBP2.84□□□□□ -1.96
PRPF39-206ENST00000554429 U2AF2P26368 475 aaKnown RBP eCLIP2.84□□□□□ -1.961e-6■■■■□ 20.8
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms