RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 HNRNPLP14866 589 aaKnown RBP eCLIP4.26□□□□□ -1.73
LIMA1-208ENST00000551691 FGFR2P21802 821 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 ARFIP2P53365 341 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 CCL23P55773 120 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 RPS16P62249 146 aaKnown RBP4.26□□□□□ -1.73
LIMA1-208ENST00000551691 TLE1Q04724 770 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 DUSP2Q05923 314 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 TARDBPQ13148 414 aaKnown RBP eCLIP4.26□□□□□ -1.73
LIMA1-208ENST00000551691 G3BP1Q13283 466 aaKnown RBP eCLIP4.26□□□□□ -1.73
LIMA1-208ENST00000551691 PPIGQ13427 754 aaKnown RBP eCLIP4.26□□□□□ -1.73
LIMA1-208ENST00000551691 ACAP1Q15027 740 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 UBE3CQ15386 1083 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 LEXMQ3ZCV2 418 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 EPHA10Q5JZY3 1008 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 FAM26FQ5R3K3 315 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 HYIQ5T013 277 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 CDC42EP5Q6NZY7 148 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 MZT2AQ6P582 158 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 ABHD15Q6UXT9 468 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 KRBA2Q6ZNG9 492 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 C15orf52Q6ZUT6 534 aaKnown RBP4.26□□□□□ -1.73
LIMA1-208ENST00000551691 CCDC89Q8N998 374 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 DTX3Q8N9I9 347 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 CCDC191Q8NCU4 936 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 OR7D4Q8NG98 312 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 KBTBD7Q8WVZ9 684 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 TEKT1Q969V4 418 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 LCORQ96JN0 433 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-208ENST00000551691 MSLNLQ96KJ4 702 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 UBXN10Q96LJ8 280 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 PPM1MQ96MI6 270 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 SLC26A6Q9BXS9 759 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 STK31Q9BXU1 1019 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 PACSIN1Q9BY11 444 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 STK33Q9BYT3 514 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 MAGEB5Q9BZ81 275 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 OSBPL6Q9BZF3 934 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 INO80BQ9C086 356 aaPredicted RBP4.26□□□□□ -1.73
LIMA1-208ENST00000551691 UNC45AQ9H3U1 944 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 TBC1D23Q9NUY8 699 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 TMOD2Q9NZR1 351 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 CDC42EP3Q9UKI2 254 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 TBX21Q9UL17 535 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 GPR52Q9Y2T5 361 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 FLNBO75369 2602 aaKnown RBP4.26□□□□□ -1.73
LIMA1-208ENST00000551691 USP24Q9UPU5 2620 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 GVINP1Q7Z2Y8 2422 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 A0A0G2JMZ2 1700 aa4.26□□□□□ -1.73
LIMA1-208ENST00000551691 UTYO14607 1347 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 GPR179Q6PRD1 2367 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 A0A1W2PPC4 97 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 A0A1W2PR48 441 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 DDTLA6NHG4 134 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-208ENST00000551691 LGALS16A8MUM7 142 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 C1QTNF3-AMACRE9PGA6 284 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 BTN3A1O00481 513 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 TRIM38O00635 465 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 LAMTOR5O43504 91 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 TMEM127O75204 238 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 CNMDO75829 334 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 ALDH1A2O94788 518 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 AHSGP02765 367 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 PYGLP06737 847 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 RAP2AP10114 183 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 ARP10275 920 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 CYBAP13498 195 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 GYPEP15421 78 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 TACR2P21452 398 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 PDIA3P30101 505 aaKnown RBP4.25□□□□□ -1.73
LIMA1-208ENST00000551691 AVPR2P30518 371 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 MAPK4P31152 587 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 HIBADHP31937 336 aaKnown RBP4.25□□□□□ -1.73
LIMA1-208ENST00000551691 CRHR1P34998 444 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 CARSP49589 748 aaKnown RBP4.25□□□□□ -1.73
LIMA1-208ENST00000551691 STAT5BP51692 787 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 HMGA2P52926 109 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 ITGA8P53708 1063 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 MLLT6P55198 1093 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-208ENST00000551691 ARL4CP56559 192 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 WNT3AP56704 352 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 NOMO3P69849 1222 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 SATB1Q01826 763 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 TAP1Q03518 808 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 EXOSC9Q06265 439 aaKnown RBP4.25□□□□□ -1.73
LIMA1-208ENST00000551691 TAF5Q15542 800 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 SHROOM1Q2M3G4 852 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-208ENST00000551691 FKBP1CQ5VVH2 108 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 KANK2Q63ZY3 851 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 LVRNQ6Q4G3 990 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 TMCO2Q7Z6W1 182 aaPredicted RBP4.25□□□□□ -1.73
LIMA1-208ENST00000551691 GATAD2AQ86YP4 633 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 YAF2Q8IY57 180 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 COLGALT2Q8IYK4 626 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 GALNT15Q8N3T1 639 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 TTC9BQ8N6N2 239 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 FBXO18Q8NFZ0 1043 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 GDPD5Q8WTR4 605 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 SOCS4Q8WXH5 440 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 EDAQ92838 391 aa4.25□□□□□ -1.73
LIMA1-208ENST00000551691 MRGPRX4Q96LA9 322 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms