RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 COMMD8Q9NX08 183 aa13.46□□□□□ -0.25
SCAF11-208ENST00000546534 NXF1Q9UBU9 619 aaKnown RBP13.46□□□□□ -0.25
SCAF11-208ENST00000546534 FBXO10Q9UK96 956 aa13.46□□□□□ -0.25
SCAF11-208ENST00000546534 SLCO1B1Q9Y6L6 691 aa13.46□□□□□ -0.25
SCAF11-208ENST00000546534 TNFSF14O43557 240 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 ITPKBP27987 946 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 OXTRP30559 389 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 IL12RB1P42701 662 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 CDH8P55286 799 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 ENPP2Q13822 863 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 SUZ12Q15022 739 aaKnown RBP13.45□□□□□ -0.26
SCAF11-208ENST00000546534 PTPRNQ16849 979 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 CCDC157Q569K6 752 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 ZMIZ2Q8NF64 920 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 CCDC127Q96BQ5 260 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 CGRRF1Q99675 332 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 SMOQ99835 787 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 NUP58Q9BVL2 599 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 XYLT2Q9H1B5 865 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 KIAA1586Q9HCI6 787 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 KRT82Q9NSB4 513 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 OSER1Q9NX31 292 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 THAP10Q9P2Z0 257 aaPredicted RBP13.45□□□□□ -0.26
SCAF11-208ENST00000546534 LSM7Q9UK45 103 aaKnown RBP13.45□□□□□ -0.26
SCAF11-208ENST00000546534 SNX11Q9Y5W9 270 aa13.45□□□□□ -0.26
SCAF11-208ENST00000546534 TK2O00142 265 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 ATXN7O15265 892 aaPredicted RBP13.44□□□□□ -0.26
SCAF11-208ENST00000546534 AP1G2O75843 785 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 BEST1O76090 585 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 STAU1O95793 577 aaKnown RBP13.44□□□□□ -0.26
SCAF11-208ENST00000546534 IGLV3-19P01714 112 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 ACO1P21399 889 aaKnown RBP13.44□□□□□ -0.26
SCAF11-208ENST00000546534 HOXD13P35453 343 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 ATP5C1P36542 298 aaKnown RBP13.44□□□□□ -0.26
SCAF11-208ENST00000546534 ZNF132P52740 706 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 COPAP53621 1224 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 PSMD6Q15008 389 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 SNRNP35Q16560 246 aaKnown RBP13.44□□□□□ -0.26
SCAF11-208ENST00000546534 KIF19Q2TAC6 998 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 DHRS13Q6UX07 377 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 Q6ZNB5 142 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 BRAPQ7Z569 592 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 FAM124AQ86V42 546 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 CACUL1Q86Y37 369 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 FUKQ8N0W3 1084 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 ZNF516Q92618 1163 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 PRCCQ92733 491 aaPredicted RBP13.44□□□□□ -0.26
SCAF11-208ENST00000546534 SMARCD1Q96GM5 515 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 CLIC6Q96NY7 704 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 SMYD3Q9H7B4 428 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 CYLDQ9NQC7 956 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 TLR8Q9NR97 1041 aaKnown RBP13.44□□□□□ -0.26
SCAF11-208ENST00000546534 FBXO2Q9UK22 296 aaPredicted RBP13.44□□□□□ -0.26
SCAF11-208ENST00000546534 SLC27A6Q9Y2P4 619 aa13.44□□□□□ -0.26
SCAF11-208ENST00000546534 GOLGA4Q13439 2230 aaKnown RBP13.44□□□□□ -0.26
SCAF11-208ENST00000546534 PPP1R3GB7ZBB8 358 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 PLK4O00444 970 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 KCNK3O14649 394 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 MDM4O15151 490 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 SYNCRIPO60506 623 aaKnown RBP13.43□□□□□ -0.26
SCAF11-208ENST00000546534 ACADMP11310 421 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 HLA-EP13747 358 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 ATICP31939 592 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 AFF3P51826 1226 aaKnown RBP13.43□□□□□ -0.26
SCAF11-208ENST00000546534 MFAP3P55082 362 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 CYP24A1Q07973 514 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 GOLGA8FQ08AF8 430 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 GOLGA8DPQ0D2H9 430 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 TRPC3Q13507 836 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 GEN1Q17RS7 908 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 SNX19Q92543 992 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 HPS3Q969F9 1004 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 SYAP1Q96A49 352 aaPredicted RBP13.43□□□□□ -0.26
SCAF11-208ENST00000546534 TMX3Q96JJ7 454 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 TNIP3Q96KP6 325 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 PANK2Q9BZ23 570 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 GZF1Q9H116 711 aaPredicted RBP13.43□□□□□ -0.26
SCAF11-208ENST00000546534 FBXO44Q9H4M3 255 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 PRORYQ9H606 182 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 NUDT5Q9UKK9 219 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 ANKRD6Q9Y2G4 727 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 CLIC4Q9Y696 253 aa13.43□□□□□ -0.26
SCAF11-208ENST00000546534 A0A087X0B3 334 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 E9PAM4 449 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 NPC1O15118 1278 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 PENKP01210 267 aaPredicted RBP13.42□□□□□ -0.26
SCAF11-208ENST00000546534 CCDC130P13994 396 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 PLA2G2AP14555 144 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 TXLNAP40222 546 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 GRK6P43250 576 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 CYP2J2P51589 502 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 MAP3K7CLP57077 242 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 ZNF234Q14588 700 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 LARP1BQ659C4 914 aaKnown RBP13.42□□□□□ -0.26
SCAF11-208ENST00000546534 STXBP4Q6ZWJ1 553 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 GPRIN1Q7Z2K8 1008 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 ACOT1Q86TX2 421 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 CCDC65Q8IXS2 484 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 UCMAQ8WVF2 138 aa13.42□□□□□ -0.26
SCAF11-208ENST00000546534 ELMO3Q96BJ8 720 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms