RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 CENPUQ71F23 418 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 FAM72BQ86X60 149 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 MGARPQ8TDB4 240 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 ARHGEF2Q92974 986 aaKnown RBP15.07■□□□□ 0
CLIP1-216ENST00000541410 TMEM109Q9BVC6 243 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 CEP41Q9BYV8 373 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 FRMD8P1Q9BZ68 369 aaPredicted RBP15.07■□□□□ 0
CLIP1-216ENST00000541410 SNX10Q9Y5X0 201 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 FRMPD3Q5JV73 1810 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 MOXD2PA6NHM9 499 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 AGTP01019 485 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 RPLP2P05387 115 aaKnown RBP15.07■□□□□ 0
CLIP1-216ENST00000541410 TGM2P21980 687 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 SCNN1AP37088 669 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 OR1G1P47890 313 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 RNASELQ05823 741 aaKnown RBP15.07■□□□□ 0
CLIP1-216ENST00000541410 LRRC14Q15048 493 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 NCBP2-AS2Q69YL0 99 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 KCNT2Q6UVM3 1135 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 GLB1LQ6UWU2 654 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 PXYLP1Q8TE99 480 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 FAF2Q96CS3 445 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 B3GALT6Q96L58 329 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 RGS18Q9NS28 235 aa15.07■□□□□ 0
CLIP1-216ENST00000541410 EXOC1LA0A1B0GW35 172 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 NDUFAB1O14561 156 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 STIP1P31948 543 aaKnown RBP15.06■□□□□ 0
CLIP1-216ENST00000541410 IFNAR2P48551 515 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 TMED2Q15363 201 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 SLC24A5Q71RS6 500 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 ARCQ7LC44 396 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 IGDCC3Q8IVU1 814 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 LGMNQ99538 433 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 ROPN1BQ9BZX4 212 aaPredicted RBP15.06■□□□□ 0
CLIP1-216ENST00000541410 ROPN1Q9HAT0 212 aaPredicted RBP15.06■□□□□ 0
CLIP1-216ENST00000541410 UBN1Q9NPG3 1134 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 PCDH10Q9P2E7 1040 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 STAP1Q9ULZ2 295 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 CHMP2BQ9UQN3 213 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 RDXP35241 583 aaKnown RBP15.06■□□□□ 0
CLIP1-216ENST00000541410 ARL4AP40617 200 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 GPX6P59796 221 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 SDHAF4Q5VUM1 108 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 PCGF5Q86SE9 256 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 SRRM1Q8IYB3 904 aaKnown RBP15.06■□□□□ 0
CLIP1-216ENST00000541410 FBXO36Q8NEA4 188 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 SHROOM3Q8TF72 1996 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 PYROXD1Q8WU10 500 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 SERPINB12Q96P63 405 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 SLC2A13Q96QE2 648 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 ACBD6Q9BR61 282 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 EPN3Q9H201 632 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 DDIT4Q9NX09 232 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 DTLQ9NZJ0 730 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 NUDT5Q9UKK9 219 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 TRIM17Q9Y577 477 aa15.06■□□□□ 0
CLIP1-216ENST00000541410 CLUHO75153 1309 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 M0QZQ0 153 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 ALOX15BO15296 676 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 MFSD11O43934 449 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 LTFP02788 710 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 GCAP28676 217 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 MMP13P45452 471 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 PGFP49763 221 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 APLP1P51693 650 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 ARL4CP56559 192 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 TNFAIP8L3Q5GJ75 292 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 MFSD5Q6N075 450 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 FAM171BQ6P995 826 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 BHLHA9Q7RTU4 235 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 RELL1Q8IUW5 271 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 ANKRD42Q8N9B4 389 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 RNF139Q8WU17 664 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 NT5C3BQ969T7 300 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 KCNK9Q9NPC2 374 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 ARHGEF4Q9NR80 690 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 TBC1D13Q9NVG8 400 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.05■□□□□ 0
CLIP1-216ENST00000541410 USP3Q9Y6I4 520 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 SCN5AQ14524 2016 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 PTPRDP23468 1912 aa15.05■□□□□ 0
CLIP1-216ENST00000541410 NLRC5Q86WI3 1866 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 A0A087WUV0 522 aaPredicted RBP15.05■□□□□ -0
CLIP1-216ENST00000541410 ARVCFO00192 962 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 NBNO60934 754 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 APRTP07741 180 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 FAM163BP0C2L3 166 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 PBX3P40426 434 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 YWHAHQ04917 246 aaPredicted RBP15.05■□□□□ -0
CLIP1-216ENST00000541410 NOMO2Q5JPE7 1267 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 RAB41Q5JT25 222 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 DCLRE1AQ6PJP8 1040 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 CEP57Q86XR8 500 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 DBF4BQ8NFT6 615 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 PGLYRP2Q96PD5 576 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 UNC93B1Q9H1C4 597 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 ETNK1Q9HBU6 452 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 CNGB3Q9NQW8 809 aa15.05■□□□□ -0
CLIP1-216ENST00000541410 METTL18O95568 372 aa15.04■□□□□ -0
CLIP1-216ENST00000541410 C3orf62Q6ZUJ4 267 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms