RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 EHD2Q9NZN4 543 aa9.76□□□□□ -0.85
DDX55-208ENST00000541259 TRPM5Q9NZQ8 1165 aa9.76□□□□□ -0.85
DDX55-208ENST00000541259 HYOU1Q9Y4L1 999 aa9.76□□□□□ -0.85
DDX55-208ENST00000541259 CAPN6Q9Y6Q1 641 aa9.76□□□□□ -0.85
DDX55-208ENST00000541259 DENND4AQ7Z401 1863 aa9.76□□□□□ -0.85
DDX55-208ENST00000541259 NUP210Q8TEM1 1887 aaPredicted RBP9.76□□□□□ -0.85
DDX55-208ENST00000541259 EYSQ5T1H1 3165 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 SYNJ2BP-COX16A0A087WUM0 186 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 A0A1W2PRU2 124 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 GRID2IPA4D2P6 1211 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 C2orf78A6NCI8 922 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 MYO1FO00160 1098 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 CAPN9O14815 690 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 PALMO75781 387 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 POU2F2P09086 479 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 TCF4P15884 667 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 PSMA2P25787 234 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 NOS2P35228 1153 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 GCGRP47871 477 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 ZNF143P52747 638 aaPredicted RBP9.75□□□□□ -0.85
DDX55-208ENST00000541259 ATXN1P54253 815 aaKnown RBP9.75□□□□□ -0.85
DDX55-208ENST00000541259 EPHA5P54756 1037 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 ATP11AP98196 1134 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 COL19A1Q14993 1142 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 CDO1Q16878 200 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 PABPC1LQ4VXU2 614 aaKnown RBP9.75□□□□□ -0.85
DDX55-208ENST00000541259 PRSS36Q5K4E3 855 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 STXBP5Q5T5C0 1151 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 SNX30Q5VWJ9 437 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 TXNDC8Q6A555 127 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 ELMSAN1Q6PJG2 1045 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 ARCQ7LC44 396 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 GPR149Q86SP6 731 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 ZSCAN30Q86W11 494 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 ARHGAP18Q8N392 663 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 RNF10Q8N5U6 811 aaKnown RBP9.75□□□□□ -0.85
DDX55-208ENST00000541259 ARFGAP1Q8N6T3 406 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 LRRC57Q8N9N7 239 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 PDZD8Q8NEN9 1154 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 CMASQ8NFW8 434 aaPredicted RBP9.75□□□□□ -0.85
DDX55-208ENST00000541259 DQX1Q8TE96 717 aaKnown RBP9.75□□□□□ -0.85
DDX55-208ENST00000541259 PPM1EQ8WY54 764 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 GOLGA1Q92805 767 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 NT5C3BQ969T7 300 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 KCTD12Q96CX2 325 aaKnown RBP9.75□□□□□ -0.85
DDX55-208ENST00000541259 SLC22A12Q96S37 553 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 CYP2S1Q96SQ9 504 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 NPY6RQ99463 290 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 PRR14Q9BWN1 585 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 RNF38Q9H0F5 515 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 S1PR5Q9H228 398 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 PIDD1Q9HB75 910 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 MTMR10Q9NXD2 777 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 CLIC5Q9NZA1 410 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 COX16Q9P0S2 106 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 UXTQ9UBK9 157 aaPredicted RBP9.75□□□□□ -0.85
DDX55-208ENST00000541259 SFMBT1Q9UHJ3 866 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 USTQ9Y2C2 406 aa9.75□□□□□ -0.85
DDX55-208ENST00000541259 MSI1O43347 362 aaKnown RBP9.74□□□□□ -0.85
DDX55-208ENST00000541259 COCHO43405 550 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 TLR5O60602 858 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 PROSCO94903 275 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 TRUB2O95900 331 aaKnown RBP9.74□□□□□ -0.85
DDX55-208ENST00000541259 OAS1P00973 400 aaKnown RBP9.74□□□□□ -0.85
DDX55-208ENST00000541259 SRGAP2BP0DMP2 458 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 RALAP11233 206 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 COMTP21964 271 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 SDC4P31431 198 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 PTPN9P43378 593 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 PPP3CCP48454 512 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 SULT1E1P49888 294 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 EFEMP1Q12805 493 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 TEAD2Q15562 447 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 CLUL1Q15846 466 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 SLC25A52Q3SY17 297 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 C10orf120Q5SQS8 335 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 HECTD3Q5T447 861 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 PDZD4Q76G19 769 aaPredicted RBP9.74□□□□□ -0.85
DDX55-208ENST00000541259 RSRC2Q7L4I2 434 aaKnown RBP9.74□□□□□ -0.85
DDX55-208ENST00000541259 BEND5Q7L4P6 421 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 BNIPLQ7Z465 357 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 SLFN11Q7Z7L1 901 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 TAC4Q86UU9 113 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 MAB21L3Q8N8X9 362 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 ITFG1Q8TB96 612 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 FNIP1Q8TF40 1166 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 RNF139Q8WU17 664 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 FAM172AQ8WUF8 416 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 ING5Q8WYH8 240 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 CENPIQ92674 756 aaPredicted RBP9.74□□□□□ -0.85
DDX55-208ENST00000541259 PABPC5Q96DU9 382 aaKnown RBP9.74□□□□□ -0.85
DDX55-208ENST00000541259 MSLNLQ96KJ4 702 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 ZSWIM3Q96MP5 696 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 CNPY3Q9BT09 278 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 SLC46A2Q9BY10 475 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 ATXN3LQ9H3M9 355 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 TRPC7Q9HCX4 862 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 IP6K2Q9UHH9 426 aa9.74□□□□□ -0.85
DDX55-208ENST00000541259 TSR3Q9UJK0 312 aaKnown RBP9.74□□□□□ -0.85
DDX55-208ENST00000541259 ALG6Q9Y672 507 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms