RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 WDR60Q8WVS4 1066 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 RNF39Q9H2S5 420 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 NGRNQ9NPE2 291 aaKnown RBP12.98□□□□□ -0.33
RNF4-222ENST00000541204 TAS2R1Q9NYW7 299 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 STOML1Q9UBI4 398 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 NME7Q9Y5B8 376 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 TEX264Q9Y6I9 313 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 PLXNB2O15031 1838 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 NVLO15381 856 aaKnown RBP12.98□□□□□ -0.33
RNF4-222ENST00000541204 DNAJC6O75061 913 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 GPR32O75388 356 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 RECQL4O94761 1208 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 PFKMP08237 780 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 ESRRAP11474 423 aaPredicted RBP12.98□□□□□ -0.33
RNF4-222ENST00000541204 CYP2B6P20813 491 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 CDH6P55285 790 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 GRIK3Q13003 919 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 FAM110CQ1W6H9 321 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 SLC27A1Q6PCB7 646 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 TLK2Q86UE8 772 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 ALYREFQ86V81 257 aaKnown RBP12.98□□□□□ -0.33
RNF4-222ENST00000541204 FNIP1Q8TF40 1166 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 NRG4Q8WWG1 115 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 MCRS1Q96EZ8 462 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 CFAP36Q96G28 342 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 MECRQ9BV79 373 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 RRAGCQ9HB90 399 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 WDR35Q9P2L0 1181 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 PLXNA1Q9UIW2 1896 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 KAT6AQ92794 2004 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 TREHO43280 583 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 TGDSO95455 350 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 TRUB2O95900 331 aaKnown RBP12.98□□□□□ -0.33
RNF4-222ENST00000541204 MYL3P08590 195 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 ADORA2BP29275 332 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 CPA2P48052 419 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 SERPINB4P48594 390 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 ROR1Q01973 937 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 SLC18A2Q05940 514 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 ZNF618Q5T7W0 954 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 SNX30Q5VWJ9 437 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 IQSEC1Q6DN90 963 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 C1orf228Q6PIY5 440 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 ZNF410Q86VK4 478 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 TTC30AQ86WT1 665 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 CTAGE3PQ8IX95 158 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 CCDC33Q8N5R6 958 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 ARMC2Q8NEN0 867 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 CMASQ8NFW8 434 aaPredicted RBP12.98□□□□□ -0.33
RNF4-222ENST00000541204 DTX3LQ8TDB6 740 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 OXNAD1Q96HP4 312 aaPredicted RBP12.98□□□□□ -0.33
RNF4-222ENST00000541204 ZNF333Q96JL9 665 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 TUBB6Q9BUF5 446 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 CNTN3Q9P232 1028 aa12.98□□□□□ -0.33
RNF4-222ENST00000541204 ENO4A6NNW6 628 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 CAPN9O14815 690 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 GPD1P21695 349 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 VHLP40337 213 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 INCA1Q0VD86 236 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 RFX8Q6ZV50 586 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 CLEC4CQ8WTT0 213 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 FAF2Q96CS3 445 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 SRPK1Q96SB4 655 aaKnown RBP12.97□□□□□ -0.33
RNF4-222ENST00000541204 NMUR2Q9GZQ4 415 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 IQCGQ9H095 443 aaKnown RBP12.97□□□□□ -0.33
RNF4-222ENST00000541204 VRTNQ9H8Y1 702 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 ASNSD1Q9NWL6 643 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 A8MXQ7 604 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 TRIM49D1C9J1S8 452 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 SMAPO00193 183 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 FCHO1O14526 889 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 COPEO14579 308 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 CCDC130P13994 396 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 TSHRP16473 764 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 ZNF143P52747 638 aaPredicted RBP12.97□□□□□ -0.33
RNF4-222ENST00000541204 KCNJ11Q14654 390 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 CMPK2Q5EBM0 449 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 LCLAT1Q6UWP7 414 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 PPM1NQ8N819 430 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 SYT15Q9BQS2 421 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 RAB6BQ9NRW1 208 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 CACNG4Q9UBN1 327 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 SLC45A1Q9Y2W3 748 aa12.97□□□□□ -0.33
RNF4-222ENST00000541204 CXorf49A8MYA2 514 aaPredicted RBP12.96□□□□□ -0.33
RNF4-222ENST00000541204 TBX10O75333 385 aa12.96□□□□□ -0.33
RNF4-222ENST00000541204 PSMG1O95456 288 aa12.96□□□□□ -0.33
RNF4-222ENST00000541204 TFE3P19532 575 aaPredicted RBP12.96□□□□□ -0.33
RNF4-222ENST00000541204 LMO2P25791 158 aa12.96□□□□□ -0.33
RNF4-222ENST00000541204 MRPS35P82673 323 aaKnown RBP12.96□□□□□ -0.33
RNF4-222ENST00000541204 KLC1Q07866 573 aa12.96□□□□□ -0.33
RNF4-222ENST00000541204 MFSD10Q14728 455 aa12.96□□□□□ -0.33
RNF4-222ENST00000541204 KYAT1Q16773 422 aa12.96□□□□□ -0.33
RNF4-222ENST00000541204 DCAF4L1Q3SXM0 396 aa12.96□□□□□ -0.33
RNF4-222ENST00000541204 FAXCQ5TGI0 409 aa12.96□□□□□ -0.33
RNF4-222ENST00000541204 NOTUMQ6P988 496 aa12.96□□□□□ -0.33
RNF4-222ENST00000541204 TMEM154Q6P9G4 183 aa12.96□□□□□ -0.33
RNF4-222ENST00000541204 UCMAQ8WVF2 138 aa12.96□□□□□ -0.33
RNF4-222ENST00000541204 SCG3Q8WXD2 468 aaKnown RBP12.96□□□□□ -0.33
RNF4-222ENST00000541204 SNX27Q96L92 541 aa12.96□□□□□ -0.33
RNF4-222ENST00000541204 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms