RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 NANOS3P60323 173 aaKnown RBP4.42□□□□□ -1.7
CD44-233ENST00000531141 GPC5P78333 572 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 CFHR3Q02985 330 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 DNASE1L3Q13609 305 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 PTK2BQ14289 1009 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 KCNB1Q14721 858 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 PROSER3Q2NL68 480 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 C10orf62Q5T681 223 aaPredicted RBP4.42□□□□□ -1.7
CD44-233ENST00000531141 SERPINA13PQ6UXR4 307 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 ZNF788Q6ZQV5 615 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 DCDC5Q6ZRR9 648 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 SKAP1Q86WV1 359 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 GALNT4Q8N4A0 578 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 C12orf76Q8N812 135 aaPredicted RBP4.42□□□□□ -1.7
CD44-233ENST00000531141 LTV1Q96GA3 475 aaPredicted RBP4.42□□□□□ -1.7
CD44-233ENST00000531141 ZNF764Q96H86 408 aaPredicted RBP4.42□□□□□ -1.7
CD44-233ENST00000531141 HS6ST2Q96MM7 605 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 OBP2BQ9NPH6 170 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 ASAP1Q9ULH1 1129 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 NFU1Q9UMS0 254 aa4.42□□□□□ -1.7
CD44-233ENST00000531141 UBE2J1Q9Y385 318 aaPredicted RBP4.42□□□□□ -1.7
CD44-233ENST00000531141 PNMA6EA0A0J9YXQ4 647 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 H3BNC9 293 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 ACKR2O00590 384 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 CTIFO43310 598 aaKnown RBP4.41□□□□□ -1.7
CD44-233ENST00000531141 CA12O43570 354 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 PRAMEF2O60811 474 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 CSTBP04080 98 aaKnown RBP4.41□□□□□ -1.7
CD44-233ENST00000531141 ANXA6P08133 673 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 COPB1P53618 953 aaKnown RBP4.41□□□□□ -1.7
CD44-233ENST00000531141 RAE1P78406 368 aaKnown RBP4.41□□□□□ -1.7
CD44-233ENST00000531141 GALNT1Q10472 559 aaPredicted RBP4.41□□□□□ -1.7
CD44-233ENST00000531141 SEMA3BQ13214 749 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 BFSP2Q13515 415 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 PFKFB4Q16877 469 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 FAM187BQ17R55 369 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 P3H1Q32P28 736 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 PRAMEF17Q5VTA0 474 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 CCDC144NLQ6NUI1 221 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 TMEM65Q6PI78 240 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 VSTM1Q6UX27 236 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 PIK3AP1Q6ZUJ8 805 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 NRSN1Q8IZ57 195 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 SEMA6DQ8NFY4 1073 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 STYXQ8WUJ0 223 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 EID2BQ96D98 161 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 HIC2Q96JB3 615 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 RITA1Q96K30 269 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 PAAF1Q9BRP4 392 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 KATNAL1Q9BW62 490 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 SAP30LQ9HAJ7 183 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 USP29Q9HBJ7 922 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 KCNK9Q9NPC2 374 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 FSCN3Q9NQT6 498 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 VPS45Q9NRW7 570 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 FBXO28Q9NVF7 368 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 FZD4Q9ULV1 537 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 AOX1Q06278 1338 aa4.41□□□□□ -1.7
CD44-233ENST00000531141 TCRBV5S1A1TA0A578 114 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 MANSC4A6NHS7 340 aaPredicted RBP4.4□□□□□ -1.71
CD44-233ENST00000531141 PRKCGP05129 697 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 ITGA2BP08514 1039 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 FBLP22087 321 aaKnown RBP4.4□□□□□ -1.71
CD44-233ENST00000531141 IGHMBP2P38935 993 aaKnown RBP4.4□□□□□ -1.71
CD44-233ENST00000531141 TRAPPC10P48553 1259 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 JAK3P52333 1124 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 POLE2P56282 527 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 TUBA4AP68366 448 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 FOXO1Q12778 655 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 CBFBQ13951 182 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 TRIM14Q14142 442 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 PDCD2Q16342 344 aaPredicted RBP4.4□□□□□ -1.71
CD44-233ENST00000531141 GRAMD1BQ3KR37 738 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 FAM83BQ5T0W9 1011 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 MSANTD2Q6P1R3 559 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 SYCE2Q6PIF2 218 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 KRT27Q7Z3Y8 459 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 CACNA2D3Q8IZS8 1091 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 FAM71DQ8N9W8 422 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 OR52L2PQ8NGH6 319 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 ADAMTS18Q8TE60 1221 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 WDR60Q8WVS4 1066 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 RSC1A1Q92681 617 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 KAZALD1Q96I82 304 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 FAR2Q96K12 515 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 ASB2Q96Q27 587 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 ARPC5LQ9BPX5 153 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 DACT1Q9NYF0 836 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 LRFN1Q9P244 771 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 PTGFRNQ9P2B2 879 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 MAFFQ9ULX9 164 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 SPATA31A1Q5TZJ5 1347 aa4.4□□□□□ -1.71
CD44-233ENST00000531141 COL11A2P13942 1736 aaPredicted RBP4.39□□□□□ -1.71
CD44-233ENST00000531141 CCDC187A0A096LP49 1063 aa4.39□□□□□ -1.71
CD44-233ENST00000531141 WIPF3A6NGB9 483 aa4.39□□□□□ -1.71
CD44-233ENST00000531141 TISP43B9A030 160 aa4.39□□□□□ -1.71
CD44-233ENST00000531141 TMEM232C9JQI7 657 aa4.39□□□□□ -1.71
CD44-233ENST00000531141 TRIM38O00635 465 aa4.39□□□□□ -1.71
CD44-233ENST00000531141 RBMXL2O75526 392 aaKnown RBP4.39□□□□□ -1.71
CD44-233ENST00000531141 TAF5LO75529 589 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms