RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 NHLRC4P0CG21 123 aaPredicted RBP6.73□□□□□ -1.33
PCF11-202ENST00000528336 CD53P19397 219 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 DRD1P21728 446 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 ADRA1DP25100 572 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 SLC5A2P31639 672 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 RENBPP51606 427 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 NSUN2Q08J23 767 aaKnown RBP eCLIP6.73□□□□□ -1.33
PCF11-202ENST00000528336 ACOX1Q15067 660 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 ZRSR2Q15696 482 aaKnown RBP6.73□□□□□ -1.33
PCF11-202ENST00000528336 P3H1Q32P28 736 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 FAM43BQ6ZT52 329 aaPredicted RBP6.73□□□□□ -1.33
PCF11-202ENST00000528336 BCDIN3DQ7Z5W3 292 aaKnown RBP6.73□□□□□ -1.33
PCF11-202ENST00000528336 PRIMA1Q86XR5 153 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 CNPY4Q8N129 248 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 PRR11Q96HE9 360 aaPredicted RBP6.73□□□□□ -1.33
PCF11-202ENST00000528336 SNX18Q96RF0 628 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 CRB3Q9BUF7 120 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 WDR12Q9GZL7 423 aaKnown RBP6.73□□□□□ -1.33
PCF11-202ENST00000528336 EPS8L2Q9H6S3 715 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 NECTIN3Q9NQS3 549 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 IGSF9Q9P2J2 1179 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 AOX1Q06278 1338 aa6.73□□□□□ -1.33
PCF11-202ENST00000528336 MANSC4A6NHS7 340 aaPredicted RBP6.72□□□□□ -1.33
PCF11-202ENST00000528336 F5H423 210 aaPredicted RBP6.72□□□□□ -1.33
PCF11-202ENST00000528336 CCER2I3L3R5 266 aa6.72□□□□□ -1.33
PCF11-202ENST00000528336 BFSP2Q13515 415 aa6.72□□□□□ -1.33
PCF11-202ENST00000528336 MORC3Q14149 939 aa6.72□□□□□ -1.33
PCF11-202ENST00000528336 TMEM196Q5HYL7 178 aa6.72□□□□□ -1.33
PCF11-202ENST00000528336 ZNF788Q6ZQV5 615 aa6.72□□□□□ -1.33
PCF11-202ENST00000528336 RASGRP3Q8IV61 690 aa6.72□□□□□ -1.33
PCF11-202ENST00000528336 PNLDC1Q8NA58 520 aaKnown RBP6.72□□□□□ -1.33
PCF11-202ENST00000528336 ZNF527Q8NB42 609 aa6.72□□□□□ -1.33
PCF11-202ENST00000528336 NAP1L4Q99733 375 aaKnown RBP6.72□□□□□ -1.33
PCF11-202ENST00000528336 ASIC5Q9NY37 505 aa6.72□□□□□ -1.33
PCF11-202ENST00000528336 PTGFRNQ9P2B2 879 aa6.72□□□□□ -1.33
PCF11-202ENST00000528336 SCINQ9Y6U3 715 aa6.72□□□□□ -1.33
PCF11-202ENST00000528336 TOPBP1Q92547 1522 aa6.71□□□□□ -1.33
PCF11-202ENST00000528336 DNMBPQ6XZF7 1577 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 A0A087WV62 115 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 FFAR2O15552 330 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 GCATO75600 419 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 C1RP00736 705 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 ZNF37AP17032 561 aaPredicted RBP6.71□□□□□ -1.34
PCF11-202ENST00000528336 MAN1A1P33908 653 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 PROK1P58294 105 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 TXNL4AP83876 142 aaKnown RBP6.71□□□□□ -1.34
PCF11-202ENST00000528336 TNFAIP2Q03169 654 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 CHAF1AQ13111 956 aaPredicted RBP6.71□□□□□ -1.34
PCF11-202ENST00000528336 MYBPC2Q14324 1141 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 AASDHQ4L235 1098 aaPredicted RBP6.71□□□□□ -1.34
PCF11-202ENST00000528336 PRAMEF17Q5VTA0 474 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 CHSY1Q86X52 802 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 PNPLA1Q8N8W4 532 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 FAM71DQ8N9W8 422 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 MAFAQ8NHW3 353 aaPredicted RBP6.71□□□□□ -1.34
PCF11-202ENST00000528336 PPM1EQ8WY54 764 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 CCDC17Q96LX7 622 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 HS6ST2Q96MM7 605 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 WDR24Q96S15 920 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 KRTAP4-5Q9BYR2 181 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 SAP30LQ9HAJ7 183 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 OBP2BQ9NPH6 170 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 MAP3K20Q9NYL2 800 aaKnown RBP6.71□□□□□ -1.34
PCF11-202ENST00000528336 ANAPC4Q9UJX5 808 aa6.71□□□□□ -1.34
PCF11-202ENST00000528336 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.7□□□□□ -1.34
PCF11-202ENST00000528336 AQP12BA6NM10 295 aa6.7□□□□□ -1.34
PCF11-202ENST00000528336 J3KTA2 159 aa6.7□□□□□ -1.34
PCF11-202ENST00000528336 CBFA2T3O75081 653 aa6.7□□□□□ -1.34
PCF11-202ENST00000528336 USP1O94782 785 aa6.7□□□□□ -1.34
PCF11-202ENST00000528336 MT-CO3P00414 261 aa6.7□□□□□ -1.34
PCF11-202ENST00000528336 HSP90AA1P07900 732 aaKnown RBP6.7□□□□□ -1.34
PCF11-202ENST00000528336 APEHP13798 732 aaKnown RBP6.7□□□□□ -1.34
PCF11-202ENST00000528336 TFF2Q03403 129 aa6.7□□□□□ -1.34
PCF11-202ENST00000528336 MAPRE1Q15691 268 aaKnown RBP6.7□□□□□ -1.34
PCF11-202ENST00000528336 ARL6IP4Q66PJ3 421 aaKnown RBP6.7□□□□□ -1.34
PCF11-202ENST00000528336 PGBD2Q6P3X8 592 aa6.7□□□□□ -1.34
PCF11-202ENST00000528336 C12orf76Q8N812 135 aaPredicted RBP6.7□□□□□ -1.34
PCF11-202ENST00000528336 POF1BQ8WVV4 589 aa6.7□□□□□ -1.34
PCF11-202ENST00000528336 EIF3CQ99613 913 aaKnown RBP6.7□□□□□ -1.34
PCF11-202ENST00000528336 PRPF18Q99633 342 aaKnown RBP6.7□□□□□ -1.34
PCF11-202ENST00000528336 ARPC5LQ9BPX5 153 aa6.7□□□□□ -1.34
PCF11-202ENST00000528336 NRBP1Q9UHY1 535 aa6.7□□□□□ -1.34
PCF11-202ENST00000528336 VPS4AQ9UN37 437 aa6.7□□□□□ -1.34
PCF11-202ENST00000528336 DTNAQ9Y4J8 743 aa6.7□□□□□ -1.34
PCF11-202ENST00000528336 PCDHB2Q9Y5E7 798 aa6.7□□□□□ -1.34
PCF11-202ENST00000528336 CUX1P39880 1505 aa6.7□□□□□ -1.34
PCF11-202ENST00000528336 WRNQ14191 1432 aaPredicted RBP eCLIP6.69□□□□□ -1.34
PCF11-202ENST00000528336 PNMA6EA0A0J9YXQ4 647 aa6.69□□□□□ -1.34
PCF11-202ENST00000528336 TCRBV5S1A1TA0A578 114 aa6.69□□□□□ -1.34
PCF11-202ENST00000528336 OR2W5A6NFC9 320 aa6.69□□□□□ -1.34
PCF11-202ENST00000528336 H7C1Q1 480 aa6.69□□□□□ -1.34
PCF11-202ENST00000528336 PRAMEF2O60811 474 aa6.69□□□□□ -1.34
PCF11-202ENST00000528336 TMIGD3P0DMS9 266 aaPredicted RBP6.69□□□□□ -1.34
PCF11-202ENST00000528336 GSTM5P46439 218 aa6.69□□□□□ -1.34
PCF11-202ENST00000528336 DGKQP52824 942 aa6.69□□□□□ -1.34
PCF11-202ENST00000528336 GPC5P78333 572 aa6.69□□□□□ -1.34
PCF11-202ENST00000528336 CCDC15Q0P6D6 951 aa6.69□□□□□ -1.34
PCF11-202ENST00000528336 SEMA3BQ13214 749 aa6.69□□□□□ -1.34
PCF11-202ENST00000528336 FAM187BQ17R55 369 aa6.69□□□□□ -1.34
PCF11-202ENST00000528336 PROSER3Q2NL68 480 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms