RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 GBE1Q04446 702 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 ZBTB16Q05516 673 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 DGKDQ16760 1214 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 C9orf57Q5W0N0 161 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 CYS1Q717R9 158 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 BZW1Q7L1Q6 419 aaKnown RBP21.98■■□□□ 1.11
VPS28-205ENST00000526204 GPATCH11Q8N954 259 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 SIGLEC10Q96LC7 697 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 TMEM120AQ9BXJ8 343 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.98■■□□□ 1.11
VPS28-205ENST00000526204 FAM159BA6NKW6 160 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 METTL18O95568 372 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 MMP3P08254 477 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 RPSAP08865 295 aaKnown RBP21.98■■□□□ 1.11
VPS28-205ENST00000526204 TFE3P19532 575 aaPredicted RBP21.98■■□□□ 1.11
VPS28-205ENST00000526204 EPHB2P29323 1055 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 SLC10A2Q12908 348 aaPredicted RBP21.98■■□□□ 1.11
VPS28-205ENST00000526204 DUSP28Q4G0W2 176 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 ANKRD20A3Q5VUR7 823 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 ATG16L1Q676U5 607 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 HEATR6Q6AI08 1181 aaKnown RBP21.98■■□□□ 1.11
VPS28-205ENST00000526204 ALKAL1Q6UXT8 129 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 CSPG4P5Q96PW8 444 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 CXCL16Q9H2A7 254 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 UBQLN1Q9UMX0 589 aaKnown RBP21.98■■□□□ 1.11
VPS28-205ENST00000526204 MAD1L1Q9Y6D9 718 aa21.98■■□□□ 1.11
VPS28-205ENST00000526204 HACD1B0YJ81 288 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 I3L4J1 428 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 DIAPH2O60879 1101 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 RFPL1O75677 317 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 SNAI1O95863 264 aaPredicted RBP21.97■■□□□ 1.11
VPS28-205ENST00000526204 CD4P01730 458 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 GJA5P36382 358 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 SEMA5AQ13591 1074 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 KCNT2Q6UVM3 1135 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 USP50Q70EL3 339 aaPredicted RBP21.97■■□□□ 1.11
VPS28-205ENST00000526204 STRADAQ7RTN6 431 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 C18orf25Q96B23 403 aaPredicted RBP21.97■■□□□ 1.11
VPS28-205ENST00000526204 SKA1Q96BD8 255 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 HSFY1Q96LI6 401 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 C7orf26Q96N11 449 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 MTMR10Q9NXD2 777 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 RNF181Q9P0P0 153 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 CITO14578 2027 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 CALB2P22676 271 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 GNL1P36915 607 aaPredicted RBP21.97■■□□□ 1.11
VPS28-205ENST00000526204 KRT72Q14CN4 511 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 FBXO47Q5MNV8 452 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 CDHR3Q6ZTQ4 885 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 ZNF534Q76KX8 674 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 HACE1Q8IYU2 909 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 RAB3IL1Q8TBN0 382 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 NSL1Q96IY1 281 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 EIF2AQ9BY44 585 aaKnown RBP21.97■■□□□ 1.11
VPS28-205ENST00000526204 DPEP3Q9H4B8 488 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.97■■□□□ 1.11
VPS28-205ENST00000526204 RCOR3Q9P2K3 495 aaPredicted RBP21.97■■□□□ 1.11
VPS28-205ENST00000526204 GINS2Q9Y248 185 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 PCDHA11Q9Y5I1 949 aa21.97■■□□□ 1.11
VPS28-205ENST00000526204 CNTFP26441 200 aa21.96■■□□□ 1.11
VPS28-205ENST00000526204 SLC8A3P57103 927 aa21.96■■□□□ 1.11
VPS28-205ENST00000526204 LDLRAD1Q5T700 205 aa21.96■■□□□ 1.11
VPS28-205ENST00000526204 PTCD3Q96EY7 689 aaKnown RBP21.96■■□□□ 1.11
VPS28-205ENST00000526204 BTBD10Q9BSF8 475 aa21.96■■□□□ 1.11
VPS28-205ENST00000526204 TRIM6Q9C030 488 aaPredicted RBP21.96■■□□□ 1.11
VPS28-205ENST00000526204 SMYD2Q9NRG4 433 aa21.96■■□□□ 1.11
VPS28-205ENST00000526204 SETD4Q9NVD3 440 aa21.96■■□□□ 1.11
VPS28-205ENST00000526204 NUMBLQ9Y6R0 609 aa21.96■■□□□ 1.11
VPS28-205ENST00000526204 GPR32O75388 356 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 MLNP12872 115 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 SMPD1P17405 629 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 SERPINB3P29508 390 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 FDFT1P37268 417 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 ARL4AP40617 200 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 EFHC1Q5JVL4 640 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 FAM91A1Q658Y4 838 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 PSTKQ8IV42 348 aaKnown RBP21.95■■□□□ 1.11
VPS28-205ENST00000526204 OR6J1Q8NGC5 347 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 CLEC4CQ8WTT0 213 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 TFB1MQ8WVM0 346 aaKnown RBP21.95■■□□□ 1.11
VPS28-205ENST00000526204 ZNF560Q96MR9 790 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 KCTD15Q96SI1 283 aaPredicted RBP21.95■■□□□ 1.11
VPS28-205ENST00000526204 TSPAN18Q96SJ8 248 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 SNX25Q9H3E2 840 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 GDAP2Q9NXN4 497 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 SLC5A4Q9NY91 659 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 KCNK4Q9NYG8 393 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 DTLQ9NZJ0 730 aa21.95■■□□□ 1.11
VPS28-205ENST00000526204 PIRO00625 290 aa21.95■■□□□ 1.1
VPS28-205ENST00000526204 PEX11AO75192 247 aa21.95■■□□□ 1.1
VPS28-205ENST00000526204 LMNAP02545 664 aaKnown RBP21.95■■□□□ 1.1
VPS28-205ENST00000526204 CSH1P0DML2 217 aa21.95■■□□□ 1.1
VPS28-205ENST00000526204 CSH2P0DML3 217 aa21.95■■□□□ 1.1
VPS28-205ENST00000526204 LCP1P13796 627 aa21.95■■□□□ 1.1
VPS28-205ENST00000526204 ADORA2BP29275 332 aa21.95■■□□□ 1.1
VPS28-205ENST00000526204 PNPLA4P41247 253 aa21.95■■□□□ 1.1
VPS28-205ENST00000526204 MRPS5P82675 430 aaKnown RBP21.95■■□□□ 1.1
VPS28-205ENST00000526204 HTR3CQ8WXA8 447 aa21.95■■□□□ 1.1
VPS28-205ENST00000526204 E2F7Q96AV8 911 aa21.95■■□□□ 1.1
VPS28-205ENST00000526204 SLC10A4Q96EP9 437 aa21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms