RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 KLHL17Q6TDP4 642 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 OLFML1Q6UWY5 402 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 STK32CQ86UX6 486 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 SLC44A2Q8IWA5 706 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-214ENST00000515035 SYTL1Q8IYJ3 562 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 FAM120BQ96EK7 910 aaKnown RBP13.66□□□□□ -0.22
TCOF1-214ENST00000515035 CDRT15Q96T59 188 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 SERHL2Q9H4I8 314 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 COPS7BQ9H9Q2 264 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-214ENST00000515035 SERHLQ9NQF3 203 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 GDF3Q9NR23 364 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 KBTBD4Q9NVX7 518 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 NCF1BA6NI72 391 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-214ENST00000515035 NCF1CA8MVU1 366 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-214ENST00000515035 NCF1P14598 390 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-214ENST00000515035 MPP3Q13368 585 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 KHDRBS2Q5VWX1 349 aaKnown RBP13.66□□□□□ -0.22
TCOF1-214ENST00000515035 CYP2R1Q6VVX0 501 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 UTP15Q8TED0 518 aaKnown RBP13.66□□□□□ -0.22
TCOF1-214ENST00000515035 KATNAL1Q9BW62 490 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 TARS2Q9BW92 718 aaKnown RBP13.66□□□□□ -0.22
TCOF1-214ENST00000515035 MST1RQ04912 1400 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 CCL15-CCL14A0A0B4J2E2 113 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 ATG7O95352 703 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 PROCP04070 461 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 CCDC130P13994 396 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 PTDSS1P48651 473 aaKnown RBP13.66□□□□□ -0.22
TCOF1-214ENST00000515035 GEMP55040 296 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 RPS7P62081 194 aaKnown RBP13.66□□□□□ -0.22
TCOF1-214ENST00000515035 TRAF3Q13114 568 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 PRKAA1Q13131 559 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 CCL15Q16663 113 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 DDR2Q16832 855 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 CHMP1BQ7LBR1 199 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 CHSY1Q86X52 802 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 ACTL9Q8TC94 416 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 APOPT1Q96IL0 206 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 PCDH9Q9HC56 1237 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 DPYSL4O14531 572 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 SNX3O60493 162 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 CHN2P52757 468 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 COX10Q12887 443 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 BAATQ14032 418 aaPredicted RBP13.66□□□□□ -0.22
TCOF1-214ENST00000515035 DNAAF5Q86Y56 855 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 ERO1BQ86YB8 467 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 RIT2Q99578 217 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 C1orf50Q9BV19 199 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 RRN3Q9NYV6 651 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 CLIC5Q9NZA1 410 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 NINJ2Q9NZG7 142 aa13.66□□□□□ -0.22
TCOF1-214ENST00000515035 CYP2C8P10632 490 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 NCAM1P13591 858 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 PSMA3P25788 255 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 CSE1LP55060 971 aaKnown RBP13.65□□□□□ -0.22
TCOF1-214ENST00000515035 PRKCEQ02156 737 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 PDIA6Q15084 440 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 NFIL3Q16649 462 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 GLRA4Q5JXX5 417 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 UGT3A1Q6NUS8 523 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 MARK2Q7KZI7 788 aaKnown RBP13.65□□□□□ -0.22
TCOF1-214ENST00000515035 FAM9CQ8IZT9 166 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 FAM81AQ8TBF8 368 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 BLOC1S5Q8TDH9 187 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 FNIP1Q8TF40 1166 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 PPP1R10Q96QC0 940 aaKnown RBP13.65□□□□□ -0.22
TCOF1-214ENST00000515035 SRPK1Q96SB4 655 aaKnown RBP13.65□□□□□ -0.22
TCOF1-214ENST00000515035 TPRKBQ9Y3C4 175 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 COMMD3-BMI1R4GMX3 469 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 MZF1P28698 734 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-214ENST00000515035 PURAQ00577 322 aaKnown RBP13.65□□□□□ -0.22
TCOF1-214ENST00000515035 PDK2Q15119 407 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 TTLL9Q3SXZ7 439 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 ZNF57Q68EA5 555 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-214ENST00000515035 EXOC3L1Q86VI1 746 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 SNX32Q86XE0 403 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 HS6ST3Q8IZP7 471 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 C9orf16Q9BUW7 83 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 KBTBD13C9JR72 458 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 DCXO43602 365 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 MRPS22P82650 360 aaKnown RBP13.65□□□□□ -0.22
TCOF1-214ENST00000515035 MGAT5Q09328 741 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 SWT1Q5T5J6 900 aaKnown RBP13.65□□□□□ -0.22
TCOF1-214ENST00000515035 ATF7IP2Q5U623 682 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 TTC27Q6P3X3 843 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 CCDC33Q8N5R6 958 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 TRPC7Q9HCX4 862 aa13.65□□□□□ -0.22
TCOF1-214ENST00000515035 C6orf203Q9P0P8 240 aaPredicted RBP13.65□□□□□ -0.22
TCOF1-214ENST00000515035 UNC5CO95185 931 aa13.65□□□□□ -0.23
TCOF1-214ENST00000515035 TTKP33981 857 aa13.65□□□□□ -0.23
TCOF1-214ENST00000515035 CDC16Q13042 620 aa13.65□□□□□ -0.23
TCOF1-214ENST00000515035 ARHGEF7Q14155 803 aa13.65□□□□□ -0.23
TCOF1-214ENST00000515035 CSHL1Q14406 222 aa13.65□□□□□ -0.23
TCOF1-214ENST00000515035 TAF5Q15542 800 aa13.65□□□□□ -0.23
TCOF1-214ENST00000515035 TMEM26Q6ZUK4 368 aa13.65□□□□□ -0.23
TCOF1-214ENST00000515035 SETD9Q8NE22 299 aa13.65□□□□□ -0.23
TCOF1-214ENST00000515035 ZSCAN18Q8TBC5 510 aaPredicted RBP13.65□□□□□ -0.23
TCOF1-214ENST00000515035 SLC20A1Q8WUM9 679 aa13.65□□□□□ -0.23
TCOF1-214ENST00000515035 MUC3BQ9H195 1237 aa13.65□□□□□ -0.23
TCOF1-214ENST00000515035 RGS18Q9NS28 235 aa13.65□□□□□ -0.23
TCOF1-214ENST00000515035 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.65□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms