RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 DDX42Q86XP3 938 aaKnown RBP eCLIP7.65□□□□□ -1.18
USP46-208ENST00000512656 ARL14EPQ8N8R7 260 aaPredicted RBP7.65□□□□□ -1.18
USP46-208ENST00000512656 C12orf50Q8NA57 414 aaPredicted RBP7.65□□□□□ -1.18
USP46-208ENST00000512656 XXYLT1Q8NBI6 393 aa7.65□□□□□ -1.18
USP46-208ENST00000512656 OR5B17Q8NGF7 314 aa7.65□□□□□ -1.18
USP46-208ENST00000512656 GOLGA5Q8TBA6 731 aa7.65□□□□□ -1.18
USP46-208ENST00000512656 MYCBPAPQ8TBZ2 947 aa7.65□□□□□ -1.18
USP46-208ENST00000512656 ZNF507Q8TCN5 953 aa7.65□□□□□ -1.18
USP46-208ENST00000512656 KBTBD7Q8WVZ9 684 aa7.65□□□□□ -1.18
USP46-208ENST00000512656 MYLPFQ96A32 169 aa7.65□□□□□ -1.18
USP46-208ENST00000512656 DHX58Q96C10 678 aa7.65□□□□□ -1.18
USP46-208ENST00000512656 CYP2S1Q96SQ9 504 aa7.65□□□□□ -1.18
USP46-208ENST00000512656 C2orf42Q9NWW7 574 aa7.65□□□□□ -1.18
USP46-208ENST00000512656 PCDHGA5Q9Y5G8 931 aa7.65□□□□□ -1.18
USP46-208ENST00000512656 WNT6Q9Y6F9 365 aa7.65□□□□□ -1.18
USP46-208ENST00000512656 KMT2BQ9UMN6 2715 aaPredicted RBP7.64□□□□□ -1.19
USP46-208ENST00000512656 ATP8B3O60423 1300 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 C2orf78A6NCI8 922 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 OTOL1A6NHN0 477 aaPredicted RBP7.64□□□□□ -1.19
USP46-208ENST00000512656 PHACTR2O75167 634 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 ATP2C2O75185 946 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 RPLP1P05386 114 aaKnown RBP7.64□□□□□ -1.19
USP46-208ENST00000512656 HSP90AA1P07900 732 aaKnown RBP7.64□□□□□ -1.19
USP46-208ENST00000512656 LMO2P25791 158 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 ATICP31939 592 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 RAP1GAPP47736 663 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 PXNP49023 591 aaPredicted RBP7.64□□□□□ -1.19
USP46-208ENST00000512656 LIMK1P53667 647 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 AP3M2P53677 418 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 PSMC1P62191 440 aaKnown RBP7.64□□□□□ -1.19
USP46-208ENST00000512656 NOP14P78316 857 aaKnown RBP7.64□□□□□ -1.19
USP46-208ENST00000512656 PSMD2Q13200 908 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 PSMD6Q15008 389 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 SETDB1Q15047 1291 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 WDR72Q3MJ13 1102 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 MDH1BQ5I0G3 518 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 PPM1JQ5JR12 505 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 TTC39BQ5VTQ0 682 aaPredicted RBP7.64□□□□□ -1.19
USP46-208ENST00000512656 TDRD10Q5VZ19 366 aaKnown RBP7.64□□□□□ -1.19
USP46-208ENST00000512656 PKN3Q6P5Z2 889 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 Q6ZS46 218 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 UNC13DQ70J99 1090 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 EPM2AIP1Q7L775 607 aaPredicted RBP7.64□□□□□ -1.19
USP46-208ENST00000512656 STKLD1Q8NE28 680 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 PDZD8Q8NEN9 1154 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 OR6B3Q8NGW1 331 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 RPLP0P6Q8NHW5 317 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 HPS3Q969F9 1004 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 CCDC127Q96BQ5 260 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 CHFRQ96EP1 664 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 CCDC97Q96F63 343 aaPredicted RBP7.64□□□□□ -1.19
USP46-208ENST00000512656 ZC3H10Q96K80 434 aaKnown RBP7.64□□□□□ -1.19
USP46-208ENST00000512656 FAM84AQ96KN4 292 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 SPACA7Q96KW9 195 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 C8orf48Q96LL4 319 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 SLITRK1Q96PX8 696 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 CGRRF1Q99675 332 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 C7orf25Q9BPX7 421 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 TTLL2Q9BWV7 592 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 ELOVL4Q9GZR5 314 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 ARRDC1-AS1Q9H2J1 176 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 CRTAC1Q9NQ79 661 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 VPS45Q9NRW7 570 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 AGPAT3Q9NRZ7 376 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 GCNT4Q9P109 453 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 EBF1Q9UH73 591 aa7.64□□□□□ -1.19
USP46-208ENST00000512656 MAP1BP46821 2468 aaKnown RBP7.64□□□□□ -1.19
USP46-208ENST00000512656 LAMA1P25391 3075 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 PTPRJQ12913 1337 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 USP24Q9UPU5 2620 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 PVALEFA0A1B0GWK0 134 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 ZNF840PA6NDX5 716 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 F8VP50 259 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 F8W735 103 aaPredicted RBP7.63□□□□□ -1.19
USP46-208ENST00000512656 LEFTY2O00292 366 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 CLIC2O15247 247 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 TGFB1I1O43294 461 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 SMNDC1O75940 238 aaKnown RBP eCLIP7.63□□□□□ -1.19
USP46-208ENST00000512656 CLSTN1O94985 981 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 RTN3O95197 1032 aaPredicted RBP7.63□□□□□ -1.19
USP46-208ENST00000512656 ABL1P00519 1130 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 ADRB1P08588 477 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 P4HA1P13674 534 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 PTPN1P18031 435 aaKnown RBP7.63□□□□□ -1.19
USP46-208ENST00000512656 TRIM21P19474 475 aaKnown RBP7.63□□□□□ -1.19
USP46-208ENST00000512656 HOXD13P35453 343 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 ME1P48163 572 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 CYP2J2P51589 502 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 SLC7A9P82251 487 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 CYP24A1Q07973 514 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 DMC1Q14565 340 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 NAA30Q147X3 362 aaPredicted RBP7.63□□□□□ -1.19
USP46-208ENST00000512656 CCDC142Q17RM4 750 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 USP39Q53GS9 565 aaKnown RBP7.63□□□□□ -1.19
USP46-208ENST00000512656 ATL3Q6DD88 541 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 CAPN12Q6ZSI9 719 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 KBTBD6Q86V97 674 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 C12orf56Q8IXR9 622 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 GLIS3Q8NEA6 775 aa7.63□□□□□ -1.19
USP46-208ENST00000512656 TSTD1Q8NFU3 115 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 112.3 ms