RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 FBXO6Q9NRD1 293 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 AP4E1Q9UPM8 1137 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 BAZ2AQ9UIF9 1905 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 LYPLA2O95372 231 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 NFICP08651 508 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 ZSCAN5DPP0CG00 497 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 PSMC3P17980 439 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 MAP3K7CLP57077 242 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 KCTD21Q4G0X4 260 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 KLHL23Q8NBE8 558 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 DDHD1Q8NEL9 900 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 ZNF570Q96NI8 536 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 TRIM15Q9C019 465 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 BAG5Q9UL15 447 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 DNALI1O14645 258 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 MICAL2O94851 1124 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 HDAC4P56524 1084 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 ACVR2BQ13705 512 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 C16orf72Q14CZ0 275 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 DLK2Q6UY11 383 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 TFB1MQ8WVM0 346 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 LENG9Q96B70 501 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 NFASCO94856 1347 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 ZNF862O60290 1169 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 SERPINB9P50453 376 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 VCPP55072 806 aaKnown RBP16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 BEX3Q00994 111 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 USP4Q13107 963 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 BMPR2Q13873 1038 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 TRIM74Q86UV6 250 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 TRIM73Q86UV7 250 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 MAGEB5Q9BZ81 275 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 WDCPQ9H6R7 721 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 TMEM134Q9H6X4 195 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 ACTL7BQ9Y614 415 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 ZNF541Q9H0D2 1346 aa16.8■□□□□ 0.28
CCDC88B-209ENST00000494080 EDF1O60869 148 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 MAFO75444 373 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 DENND1BQ6P3S1 775 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 SLC27A1Q6PCB7 646 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 PRUNE1Q86TP1 453 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 TLK2Q86UE8 772 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 LRRC57Q8N9N7 239 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 PRPF18Q99633 342 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 APOL2Q9BQE5 337 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 CEP41Q9BYV8 373 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 GRIP2Q9C0E4 1043 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 GALNT8Q9NY28 637 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 STX18Q9P2W9 335 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 ITGA11Q9UKX5 1188 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 COMMD3-BMI1R4GMX3 469 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 HNRNPRO43390 633 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 THP07101 528 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 RPL7AP62424 266 aaKnown RBP16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 ABHD15Q6UXT9 468 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 OTOAQ7RTW8 1153 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 JADE3Q92613 823 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 ZNF512Q96ME7 567 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 CDT1Q9H211 546 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 ARHGEF3Q9NR81 526 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 ZNF229Q9UJW7 825 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 SNX5Q9Y5X3 404 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 E5RJQ4 531 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 PPP1R15BQ5SWA1 713 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 MFSD5Q6N075 450 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 WDR60Q8WVS4 1066 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 WRAP73Q9P2S5 460 aaPredicted RBP16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 RAG1P15918 1043 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 MIPP30301 263 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 PSMD7P51665 324 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 ZNF786Q8N393 782 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 GALNT15Q8N3T1 639 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 PCDHB18PQ96TA0 734 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 PRKAG2Q9UGJ0 569 aa16.79■□□□□ 0.28
CCDC88B-209ENST00000494080 PPIL2Q13356 520 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 MAMLD1Q13495 774 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 GSTA3Q16772 222 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 SIAH1Q8IUQ4 282 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 CCNJLQ8IV13 435 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 KIAA2013Q8IYS2 634 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 ZSWIM2Q8NEG5 633 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 CYGBQ8WWM9 190 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 PBXIP1Q96AQ6 731 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 MAML3Q96JK9 1138 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 ORC6Q9Y5N6 252 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 FAM237BA0A1B0GVD1 139 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 SYCE1LA8MT33 242 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 PMPCBO75439 489 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 ZNF189O75820 626 aaPredicted RBP16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 POMCP01189 267 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 POLBP06746 335 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 EIF4BP23588 611 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 SERPINB5P36952 375 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 DCTN2Q13561 401 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 USP10Q14694 798 aaKnown RBP16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 RMI1Q9H9A7 625 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 SHOC2Q9UQ13 582 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 RPS6KL1Q9Y6S9 549 aa16.78■□□□□ 0.28
CCDC88B-209ENST00000494080 ZNF142P52746 1687 aaPredicted RBP16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms