RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 GPD1P21695 349 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 ATP5C1P36542 298 aaKnown RBP17.95■□□□□ 0.46
LIME1-208ENST00000493265 SULT1E1P49888 294 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 NAP1L1P55209 391 aaKnown RBP17.95■□□□□ 0.46
LIME1-208ENST00000493265 PITX1P78337 314 aaPredicted RBP17.95■□□□□ 0.46
LIME1-208ENST00000493265 ATP11AP98196 1134 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 CDO1Q16878 200 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 PPP1R15BQ5SWA1 713 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 SNX30Q5VWJ9 437 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 TRNP1Q6NT89 227 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 ST13P5Q8NFI4 369 aaPredicted RBP17.95■□□□□ 0.46
LIME1-208ENST00000493265 SLC35G2Q8TBE7 412 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 ZNF564Q8TBZ8 553 aaPredicted RBP17.95■□□□□ 0.46
LIME1-208ENST00000493265 CFAP57Q96MR6 1250 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 NECTIN4Q96NY8 510 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 RNF38Q9H0F5 515 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 TASP1Q9H6P5 420 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 FAM204AQ9H8W3 233 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 OSGEPQ9NPF4 335 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 TRIM10Q9UDY6 481 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 ANAPC7Q9UJX3 599 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 DUSP10Q9Y6W6 482 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 ZDBF2Q9HCK1 2354 aa17.95■□□□□ 0.46
LIME1-208ENST00000493265 TMEM191CA6NGB0 347 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 MSI1O43347 362 aaKnown RBP17.94■□□□□ 0.46
LIME1-208ENST00000493265 OAS1P00973 400 aaKnown RBP17.94■□□□□ 0.46
LIME1-208ENST00000493265 HMBSP08397 361 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 TFE3P19532 575 aaPredicted RBP17.94■□□□□ 0.46
LIME1-208ENST00000493265 NOS2P35228 1153 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 MATKP42679 507 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 KIF5AQ12840 1032 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 C15orf59Q2T9L4 293 aaPredicted RBP17.94■□□□□ 0.46
LIME1-208ENST00000493265 TADA2BQ86TJ2 420 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 NPAS3Q8IXF0 933 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 TXLNBQ8N3L3 684 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 DQX1Q8TE96 717 aaKnown RBP17.94■□□□□ 0.46
LIME1-208ENST00000493265 RFFLQ8WZ73 363 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 SUSD6Q92537 303 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 FGF13Q92913 245 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 TRIM44Q96DX7 344 aaPredicted RBP17.94■□□□□ 0.46
LIME1-208ENST00000493265 CDK5RAP1Q96SZ6 601 aaKnown RBP17.94■□□□□ 0.46
LIME1-208ENST00000493265 TBCBQ99426 244 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 OLA1Q9NTK5 396 aaKnown RBP17.94■□□□□ 0.46
LIME1-208ENST00000493265 MARCH2Q9P0N8 246 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 DNMT3LQ9UJW3 386 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 PPP2R2CQ9Y2T4 447 aa17.94■□□□□ 0.46
LIME1-208ENST00000493265 SLC12A8A0AV02 714 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 C2CD4BA6NLJ0 364 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 M0QYT0 321 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 BUB1O43683 1085 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 IRF1P10914 325 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 PSMA2P25787 234 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 DDX6P26196 483 aaKnown RBP eCLIP17.93■□□□□ 0.464e-8■■□□□ 14.4
LIME1-208ENST00000493265 SDC4P31431 198 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 AVPR1AP37288 418 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 TUBP50607 506 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 PTPN5P54829 565 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 OGDHQ02218 1023 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 NME3Q13232 169 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 CCDC14Q49A88 953 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 SH3PXD2AQ5TCZ1 1133 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 POTEHQ6S545 545 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 TAC4Q86UU9 113 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 RHOT2Q8IXI1 618 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 CMTM8Q8IZV2 173 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 FBXL6Q8N531 539 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 ZSCAN18Q8TBC5 510 aaPredicted RBP17.93■□□□□ 0.46
LIME1-208ENST00000493265 MYADMQ96S97 322 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 DDX23Q9BUQ8 820 aaKnown RBP17.93■□□□□ 0.46
LIME1-208ENST00000493265 LZTFL1Q9NQ48 299 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 GKN1Q9NS71 199 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 DDIT4Q9NX09 232 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 UVRAGQ9P2Y5 699 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 CDH7Q9ULB5 785 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 STAP1Q9ULZ2 295 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 USTQ9Y2C2 406 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 ANAPC1Q9H1A4 1944 aa17.93■□□□□ 0.46
LIME1-208ENST00000493265 MACROD2A1Z1Q3 448 aa17.92■□□□□ 0.46
LIME1-208ENST00000493265 TRUB2O95900 331 aaKnown RBP17.92■□□□□ 0.46
LIME1-208ENST00000493265 SIGLEC14Q08ET2 396 aa17.92■□□□□ 0.46
LIME1-208ENST00000493265 RAB6CQ53S08 254 aa17.92■□□□□ 0.46
LIME1-208ENST00000493265 RNF34Q969K3 372 aa17.92■□□□□ 0.46
LIME1-208ENST00000493265 RAB6CQ9H0N0 254 aa17.92■□□□□ 0.46
LIME1-208ENST00000493265 TRMT1Q9NXH9 659 aaKnown RBP17.92■□□□□ 0.46
LIME1-208ENST00000493265 GUCA1BQ9UMX6 200 aa17.92■□□□□ 0.46
LIME1-208ENST00000493265 PAXBP1Q9Y5B6 917 aa17.92■□□□□ 0.46
LIME1-208ENST00000493265 CPQQ9Y646 472 aa17.92■□□□□ 0.46
LIME1-208ENST00000493265 DENND4CQ5VZ89 1909 aa17.92■□□□□ 0.46
LIME1-208ENST00000493265 MYO1FO00160 1098 aa17.91■□□□□ 0.46
LIME1-208ENST00000493265 SCAMP3O14828 347 aaKnown RBP17.91■□□□□ 0.46
LIME1-208ENST00000493265 PJA2O43164 708 aa17.91■□□□□ 0.46
LIME1-208ENST00000493265 CCP110O43303 1012 aa17.91■□□□□ 0.46
LIME1-208ENST00000493265 GBP1P32455 592 aa17.91■□□□□ 0.46
LIME1-208ENST00000493265 ZNF143P52747 638 aaPredicted RBP17.91■□□□□ 0.46
LIME1-208ENST00000493265 VCPP55072 806 aaKnown RBP17.91■□□□□ 0.46
LIME1-208ENST00000493265 DEUP1Q05D60 604 aa17.91■□□□□ 0.46
LIME1-208ENST00000493265 TCF15Q12870 199 aa17.91■□□□□ 0.46
LIME1-208ENST00000493265 MESDQ14696 234 aa17.91■□□□□ 0.46
LIME1-208ENST00000493265 SLC25A52Q3SY17 297 aa17.91■□□□□ 0.46
LIME1-208ENST00000493265 FAM78AQ5JUQ0 283 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms