RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 TCRBV5S1A1TA0A578 114 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 TRIM38O00635 465 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 TPD52L2O43399 206 aaKnown RBP6.17□□□□□ -1.42
USP48-209ENST00000487880 PRAMEF2O60811 474 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 USP1O94782 785 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 TMIGD3P0DMS9 266 aaPredicted RBP6.17□□□□□ -1.42
USP48-209ENST00000487880 KLRK1P26718 216 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 CHKAP35790 457 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 PROK1P58294 105 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 TXNL4AP83876 142 aaKnown RBP6.17□□□□□ -1.42
USP48-209ENST00000487880 NHLH1Q02575 133 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 CFHR3Q02985 330 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 TRIM60Q495X7 471 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 TANGO2Q6ICL3 276 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 KRTAP5-3Q6L8H2 238 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 CCDC144NLQ6NUI1 221 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 ADGRG3Q86Y34 549 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 NRSN1Q8IZ57 195 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 NKAPQ8N5F7 415 aaKnown RBP6.17□□□□□ -1.42
USP48-209ENST00000487880 C12orf76Q8N812 135 aaPredicted RBP6.17□□□□□ -1.42
USP48-209ENST00000487880 MAGEH1Q9H213 219 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 AGO4Q9HCK5 861 aaKnown RBP6.17□□□□□ -1.42
USP48-209ENST00000487880 KCNK9Q9NPC2 374 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 DACT1Q9NYF0 836 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 GRHPRQ9UBQ7 328 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 ARHGEF17Q96PE2 2063 aaPredicted RBP6.17□□□□□ -1.42
USP48-209ENST00000487880 AOX1Q06278 1338 aa6.17□□□□□ -1.42
USP48-209ENST00000487880 H3BNC9 293 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 M0QZQ0 153 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 DNPH1O43598 174 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 EXOC3O60645 756 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 MT-CO3P00414 261 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 ATF7P17544 494 aaPredicted RBP6.16□□□□□ -1.42
USP48-209ENST00000487880 PNLIPRP1P54315 467 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 INHBEP58166 350 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 SEMA3BQ13214 749 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 CSHL1Q14406 222 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 PDCD2Q16342 344 aaPredicted RBP6.16□□□□□ -1.42
USP48-209ENST00000487880 TMEM63BQ5T3F8 832 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 FCRLBQ6BAA4 426 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 P3H2Q8IVL5 708 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 MAFAQ8NHW3 353 aaPredicted RBP6.16□□□□□ -1.42
USP48-209ENST00000487880 CINPQ9BW66 212 aaPredicted RBP6.16□□□□□ -1.42
USP48-209ENST00000487880 TFCP2L1Q9NZI6 479 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 SH3BP4Q9P0V3 963 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 LRFN1Q9P244 771 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 SEMA5BQ9P283 1151 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 FZD4Q9ULV1 537 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 COX11Q9Y6N1 276 aa6.16□□□□□ -1.42
USP48-209ENST00000487880 BTBD19C9JJ37 291 aa6.15□□□□□ -1.42
USP48-209ENST00000487880 EIF3JO75822 258 aaKnown RBP6.15□□□□□ -1.42
USP48-209ENST00000487880 ITGA2BP08514 1039 aa6.15□□□□□ -1.42
USP48-209ENST00000487880 NHLRC4P0CG21 123 aaPredicted RBP6.15□□□□□ -1.42
USP48-209ENST00000487880 ZNF37AP17032 561 aaPredicted RBP6.15□□□□□ -1.42
USP48-209ENST00000487880 GSTM5P46439 218 aa6.15□□□□□ -1.42
USP48-209ENST00000487880 COPB1P53618 953 aaKnown RBP6.15□□□□□ -1.42
USP48-209ENST00000487880 RAE1P78406 368 aaKnown RBP6.15□□□□□ -1.42
USP48-209ENST00000487880 TFF2Q03403 129 aa6.15□□□□□ -1.42
USP48-209ENST00000487880 CCDC15Q0P6D6 951 aa6.15□□□□□ -1.42
USP48-209ENST00000487880 PROSER3Q2NL68 480 aa6.15□□□□□ -1.42
USP48-209ENST00000487880 SUMO4Q6EEV6 95 aa6.15□□□□□ -1.42
USP48-209ENST00000487880 TTC30AQ86WT1 665 aa6.15□□□□□ -1.42
USP48-209ENST00000487880 MORC4Q8TE76 937 aa6.15□□□□□ -1.42
USP48-209ENST00000487880 SLITRK6Q9H5Y7 841 aa6.15□□□□□ -1.42
USP48-209ENST00000487880 FNDC1Q4ZHG4 1894 aaPredicted RBP6.14□□□□□ -1.43
USP48-209ENST00000487880 CCDC187A0A096LP49 1063 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 hCG_1642624A0A1W2PR95 340 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 FAM90A18PA6NE21 464 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 FAM90A16PA6NEW6 464 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 FAM90A9PA6NNJ1 464 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 FAM90A5PA8MXJ8 464 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 FCHO1O14526 889 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 NBNO60934 754 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 RPP40O75818 363 aaKnown RBP6.14□□□□□ -1.43
USP48-209ENST00000487880 FAM90A15PP0C7V4 464 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 FAM90A14PP0C7W9 464 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 MMP8P22894 467 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 GALNSP34059 522 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 GRK6P43250 576 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 POLE2P56282 527 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 BFSP2Q13515 415 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 LARS2Q15031 903 aaKnown RBP6.14□□□□□ -1.43
USP48-209ENST00000487880 FAM187BQ17R55 369 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 RINT1Q6NUQ1 792 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 RD3Q7Z3Z2 195 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 TRABD2AQ86V40 505 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 FAM71DQ8N9W8 422 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 WDR60Q8WVS4 1066 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 RITA1Q96K30 269 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 RTKNQ9BST9 563 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 TMEM120AQ9BXJ8 343 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 PRDM8Q9NQV8 689 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 HERC5Q9UII4 1024 aaKnown RBP6.14□□□□□ -1.43
USP48-209ENST00000487880 NFU1Q9UMS0 254 aa6.14□□□□□ -1.43
USP48-209ENST00000487880 UBE2J1Q9Y385 318 aaPredicted RBP6.14□□□□□ -1.43
USP48-209ENST00000487880 LOC105369274A0A096LPK9 316 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 LOC102723532A0A0G2JNH3 316 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 POC1B-GALNT4F8VUJ3 575 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 CER1O95813 267 aa6.13□□□□□ -1.43
USP48-209ENST00000487880 CHRM5P08912 532 aaPredicted RBP6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms