RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 NUP98P52948 1817 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 KANSL1LA0AUZ9 987 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 H0YIN7 160 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 K7EPI3 171 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 FOXD2O60548 495 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-209ENST00000487188 SERPINB7O75635 380 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 H6PDO95479 791 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 CALB1P05937 261 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 THRAP10827 490 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 MYL4P12829 197 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 PHKA2P46019 1235 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 NLRP11P59045 1033 aaKnown RBP6.44□□□□□ -1.38
VPS13D-209ENST00000487188 ITGADQ13349 1161 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 PPP2R5DQ14738 602 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 SMAD1Q15797 465 aaKnown RBP6.44□□□□□ -1.38
VPS13D-209ENST00000487188 ZNF423Q2M1K9 1284 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 PPP6R3Q5H9R7 873 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-209ENST00000487188 ANGEL2Q5VTE6 544 aaKnown RBP6.44□□□□□ -1.38
VPS13D-209ENST00000487188 RNF111Q6ZNA4 994 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 FRMD7Q6ZUT3 714 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 KRT27Q7Z3Y8 459 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 ZNF276Q8N554 614 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 KYQ8NBH2 561 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 HELQQ8TDG4 1101 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 PDCD6IPQ8WUM4 868 aaKnown RBP6.44□□□□□ -1.38
VPS13D-209ENST00000487188 HSPH1Q92598 858 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 DLG3Q92796 817 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 PLEKHA8Q96JA3 519 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 MMP19Q99542 508 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 HNRNPABQ99729 332 aaKnown RBP6.44□□□□□ -1.38
VPS13D-209ENST00000487188 SH2D3AQ9BRG2 576 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 RTFDC1Q9BY42 306 aaPredicted RBP6.44□□□□□ -1.38
VPS13D-209ENST00000487188 XPNPEP1Q9NQW7 623 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 GIN1Q9NXP7 522 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 IGSF9Q9P2J2 1179 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 VAV3Q9UKW4 847 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 EFR3BQ9Y2G0 817 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 UBR2Q8IWV8 1755 aa6.44□□□□□ -1.38
VPS13D-209ENST00000487188 HNRNPDLO14979 420 aaKnown RBP6.43□□□□□ -1.38
VPS13D-209ENST00000487188 NDUFB5O43674 189 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 ZBED1O96006 694 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 LDHAP00338 332 aaKnown RBP6.43□□□□□ -1.38
VPS13D-209ENST00000487188 SERPINE1P05121 402 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 SERPINB9P50453 376 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 CDH15P55291 814 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 GRIK5Q16478 980 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 N4BP2L1Q5TBK1 243 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-209ENST00000487188 FAXCQ5TGI0 409 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 OGFOD2Q6N063 350 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 RWDD4Q6NW29 188 aaKnown RBP6.43□□□□□ -1.38
VPS13D-209ENST00000487188 CDKL2Q92772 493 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 MBOAT7Q96N66 472 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 NACA2Q9H009 215 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 VPS45Q9NRW7 570 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 C20orf96Q9NUD7 363 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-209ENST00000487188 PNPOQ9NVS9 261 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 SCHIP1Q9P0W5 487 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-209ENST00000487188 STK39Q9UEW8 545 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 PCSK1NQ9UHG2 260 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 PRPF19Q9UMS4 504 aaKnown RBP6.43□□□□□ -1.38
VPS13D-209ENST00000487188 SNX13Q9Y5W8 968 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 NHSQ6T4R5 1651 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 GOLGA8QA0A0J9YX86 632 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 TCRBV7S3A2A0A539 114 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 GOLGA8OA6NCC3 632 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 GOLGA8NF8WBI6 632 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 G3V3G9 751 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 CSPG5O95196 566 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 KRT7P08729 469 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 COL6A2P12110 1019 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 TAL1P17542 331 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-209ENST00000487188 ME2P23368 584 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 GPC3P51654 580 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 CLCN2P51788 898 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 MAPK10P53779 464 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 GDF10P55107 478 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 CDK18Q07002 472 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 ANKDD1AQ495B1 522 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 DCAF8Q5TAQ9 597 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 VWA5B1Q5TIE3 1220 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 TPTE2Q6XPS3 522 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 KBTBD6Q86V97 674 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 ZSWIM2Q8NEG5 633 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 ZSCAN18Q8TBC5 510 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-209ENST00000487188 TSNARE1Q96NA8 513 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 SETDB2Q96T68 719 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 RTKNQ9BST9 563 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 DHRS4Q9BTZ2 278 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 OSBPL11Q9BXB4 747 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 KLC2Q9H0B6 622 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 CLK4Q9HAZ1 481 aaKnown RBP6.43□□□□□ -1.38
VPS13D-209ENST00000487188 PPME1Q9Y570 386 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 CDY2AQ9Y6F7 541 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 CDY1Q9Y6F8 540 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 C1orf232A0A0U1RR37 186 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 E2F8A0AVK6 867 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 F8VP50 259 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 KPNA4O00629 521 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-209ENST00000487188 UGT1A9O60656 530 aa6.43□□□□□ -1.38
VPS13D-209ENST00000487188 GLRA3O75311 464 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms