RNA–Protein interactions for RNA: ENST00000486991.1

NR1H3-223, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 4

Gene NR1H3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-223	ENST00000486991	SMARCD1	Q96GM5	515 aa		13.73	□□□□□ -0.21
NR1H3-223	ENST00000486991	CCDC42	Q96M95	316 aa		13.73	□□□□□ -0.21
NR1H3-223	ENST00000486991	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	13.73	□□□□□ -0.21
NR1H3-223	ENST00000486991	KIF9	Q9HAQ2	790 aa		13.73	□□□□□ -0.21
NR1H3-223	ENST00000486991	GKN1	Q9NS71	199 aa		13.73	□□□□□ -0.21
NR1H3-223	ENST00000486991	PCDHGC3	Q9UN70	934 aa		13.73	□□□□□ -0.21
NR1H3-223	ENST00000486991	CEP83	Q9Y592	693 aa		13.73	□□□□□ -0.21
NR1H3-223	ENST00000486991	MYO18A	Q92614	2054 aa	Known RBP	13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	SSU72P8	A0A1W2PR75	194 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	C2orf78	A6NCI8	922 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	SOWAHD	A6NJG2	315 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	TRIM66	O15016	1216 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	NRDC	O43847	1150 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	AKR1B10	O60218	316 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	FECH	P22830	423 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	GRIK1	P39086	918 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	MAP3K7CL	P57077	242 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	SLC8A3	P57103	927 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	AMPD2	Q01433	879 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	PDE4C	Q08493	712 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	BST2	Q10589	180 aa	Known RBP	13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	CCIN	Q13939	588 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	ZNF268	Q14587	947 aa	Predicted RBP	13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	SF3A2	Q15428	464 aa	Known RBP	13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	TRIM72	Q6ZMU5	477 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	DENND5B	Q6ZUT9	1274 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	CCDC112	Q8NEF3	446 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	ZMIZ2	Q8NF64	920 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	PCDHB18P	Q96TA0	734 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	SYT11	Q9BT88	431 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	DUSP16	Q9BY84	665 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	FBRSL1	Q9HCM7	1045 aa	Known RBP	13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	HPS4	Q9NQG7	708 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	RXFP3	Q9NSD7	469 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	ADAMTS1	Q9UHI8	967 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	RALGAPA1	Q6GYQ0	2036 aa		13.72	□□□□□ -0.21
NR1H3-223	ENST00000486991	CHD8	Q9HCK8	2581 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	TMCO5B	A8MYB1	307 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	DDX3X	O00571	662 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	TNFRSF10B	O14763	440 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	SLC30A4	O14863	429 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	SETSIP	P0DME0	302 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	ARSA	P15289	507 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	PFKL	P17858	780 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	CYLC1	P35663	651 aa	Predicted RBP	13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	PPP3CC	P48454	512 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	KIF11	P52732	1056 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	ZXDB	P98169	803 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	USP4	Q13107	963 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	MTF1	Q14872	753 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	CSRP2	Q16527	193 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	CLEC16A	Q2KHT3	1053 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	ITPRIPL2	Q3MIP1	535 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	DGKK	Q5KSL6	1271 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	NAA35	Q5VZE5	725 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	FSTL4	Q6MZW2	842 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	CC2D1A	Q6P1N0	951 aa	Predicted RBP	13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	CLEC20A	Q6ZU45	233 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	TMEM139	Q8IV31	216 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	TMEM35B	Q8NCS4	154 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	C1orf131	Q8NDD1	294 aa	Known RBP	13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	OLIG1	Q8TAK6	271 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	NETO1	Q8TDF5	533 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	EXOC4	Q96A65	974 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	ZNF830	Q96NB3	372 aa	Predicted RBP	13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	KCNK16	Q96T55	309 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	SMO	Q99835	787 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	FAM83C	Q9BQN1	747 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	LHX5	Q9H2C1	402 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	ARRDC1-AS1	Q9H2J1	176 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	SMOC1	Q9H4F8	434 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	EBF3	Q9H4W6	596 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	DMAP1	Q9NPF5	467 aa	Predicted RBP	13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	SPTLC3	Q9NUV7	552 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	IL37	Q9NZH6	218 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	ACACB	O00763	2458 aa		13.71	□□□□□ -0.21
NR1H3-223	ENST00000486991	SPAG17	Q6Q759	2223 aa		13.71	□□□□□ -0.22
NR1H3-223	ENST00000486991	TPR	P12270	2363 aa	Known RBP	13.71	□□□□□ -0.22
NR1H3-223	ENST00000486991	SDK1	Q7Z5N4	2213 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991		A0A087X0T9	212 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	TULP2	O00295	520 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	BEST1	O76090	585 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	PAPSS2	O95340	614 aa	Predicted RBP	13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	LSM8	O95777	96 aa	Known RBP	13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	OLFM2	O95897	454 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	CYP1A1	P04798	512 aa	Predicted RBP	13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	ADRB1	P08588	477 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	FAM228B	P0C875	321 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	GPD2	P43304	727 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	RGS7	P49802	495 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	NOMO3	P69849	1222 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	GFPT1	Q06210	699 aa	Predicted RBP	13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	ZNF77	Q15935	545 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	ASTE1	Q2TB18	679 aa	Predicted RBP	13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	PKDCC	Q504Y2	493 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	RAD9B	Q6WBX8	426 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	KBTBD6	Q86V97	674 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	WDR5B	Q86VZ2	330 aa		13.7	□□□□□ -0.22
NR1H3-223	ENST00000486991	CCDC170	Q8IYT3	715 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms