RNA–Protein interactions for RNA: ENST00000483851.6

SHOX2-204, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SHOX2, Length 1,866 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-204ENST00000483851 PCDH9Q9HC56 1237 aa27.27■■□□□ 1.96
SHOX2-204ENST00000483851 CDR1P51861 262 aa27.26■■□□□ 1.95
SHOX2-204ENST00000483851 ZNF135P52742 658 aaPredicted RBP27.26■■□□□ 1.95
SHOX2-204ENST00000483851 UAP1Q16222 522 aaPredicted RBP27.26■■□□□ 1.95
SHOX2-204ENST00000483851 FAM131BQ86XD5 332 aa27.26■■□□□ 1.95
SHOX2-204ENST00000483851 PLD5Q8N7P1 536 aa27.26■■□□□ 1.95
SHOX2-204ENST00000483851 PCDH19Q8TAB3 1148 aa27.26■■□□□ 1.95
SHOX2-204ENST00000483851 SLC7A14Q8TBB6 771 aa27.26■■□□□ 1.95
SHOX2-204ENST00000483851 HAUS1Q96CS2 278 aa27.26■■□□□ 1.95
SHOX2-204ENST00000483851 TXLNGYQ9BZA5 131 aa27.26■■□□□ 1.95
SHOX2-204ENST00000483851 FBXO44Q9H4M3 255 aa27.26■■□□□ 1.95
SHOX2-204ENST00000483851 CWH43Q9H720 699 aa27.26■■□□□ 1.95
SHOX2-204ENST00000483851 ABCC13Q9NSE7 274 aa27.26■■□□□ 1.95
SHOX2-204ENST00000483851 UPP2O95045 317 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 STIP1P31948 543 aaKnown RBP27.25■■□□□ 1.95
SHOX2-204ENST00000483851 ARL4AP40617 200 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 HNRNPH2P55795 449 aaKnown RBP27.25■■□□□ 1.95
SHOX2-204ENST00000483851 SLMAPQ14BN4 828 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 PPP6R3Q5H9R7 873 aaPredicted RBP27.25■■□□□ 1.95
SHOX2-204ENST00000483851 MFSD5Q6N075 450 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 LRIG3Q6UXM1 1119 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 TMEM199Q8N511 208 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 PQLC3Q8N755 202 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 ZNF689Q96CS4 500 aaPredicted RBP27.25■■□□□ 1.95
SHOX2-204ENST00000483851 FOXP3Q9BZS1 431 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 PIGVQ9NUD9 493 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 HCSTQ9UBK5 93 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 H0YGN5 161 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 NR2C2P49116 596 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 EIF3EP60228 445 aaKnown RBP27.25■■□□□ 1.95
SHOX2-204ENST00000483851 ARL13BQ3SXY8 428 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 EFHC2Q5JST6 749 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 RNF168Q8IYW5 571 aaPredicted RBP27.25■■□□□ 1.95
SHOX2-204ENST00000483851 NUP93Q8N1F7 819 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 WDR6Q9NNW5 1121 aaKnown RBP27.25■■□□□ 1.95
SHOX2-204ENST00000483851 NFS1Q9Y697 457 aa27.25■■□□□ 1.95
SHOX2-204ENST00000483851 BAIAP3O94812 1187 aa27.24■■□□□ 1.95
SHOX2-204ENST00000483851 HSD17B3P37058 310 aa27.24■■□□□ 1.95
SHOX2-204ENST00000483851 PITX1P78337 314 aaPredicted RBP27.24■■□□□ 1.95
SHOX2-204ENST00000483851 DHX9Q08211 1270 aaKnown RBP27.24■■□□□ 1.95
SHOX2-204ENST00000483851 USP41Q3LFD5 358 aa27.24■■□□□ 1.95
SHOX2-204ENST00000483851 EMC10Q5UCC4 262 aa27.24■■□□□ 1.95
SHOX2-204ENST00000483851 RHBDF2Q6PJF5 856 aa27.24■■□□□ 1.95
SHOX2-204ENST00000483851 SCN4BQ8IWT1 228 aa27.24■■□□□ 1.95
SHOX2-204ENST00000483851 KCTD15Q96SI1 283 aaPredicted RBP27.24■■□□□ 1.95
SHOX2-204ENST00000483851 COMMD8Q9NX08 183 aa27.24■■□□□ 1.95
SHOX2-204ENST00000483851 IL37Q9NZH6 218 aa27.24■■□□□ 1.95
SHOX2-204ENST00000483851 FBXW11Q9UKB1 542 aa27.24■■□□□ 1.95
SHOX2-204ENST00000483851 SCML2Q9UQR0 700 aa27.24■■□□□ 1.95
SHOX2-204ENST00000483851 RAG1P15918 1043 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 PECAM1P16284 738 aaPredicted RBP27.23■■□□□ 1.95
SHOX2-204ENST00000483851 ADRA1BP35368 520 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 NME3Q13232 169 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 ZSCAN26Q16670 478 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 RTP2Q5QGT7 225 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 CEP128Q6ZU80 1094 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 ARHGAP18Q8N392 663 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 SCAMP5Q8TAC9 235 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 CEP295NLQ96MC4 621 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 CSPG4P5Q96PW8 444 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 TMEM121Q9BTD3 319 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 DDIT4Q9NX09 232 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 SAE1Q9UBE0 346 aaPredicted RBP27.23■■□□□ 1.95
SHOX2-204ENST00000483851 BACE2Q9Y5Z0 518 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 COL4A6Q14031 1691 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 CFAP69A5D8W1 941 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 TRIM43BA6NCK2 446 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 NT5C1B-RDH14C9J2C7 533 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 SGK1O00141 431 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 TP73O15350 636 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 RBP3P10745 1247 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 CXCR3P49682 368 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 YWHAGP61981 247 aaKnown RBP eCLIP27.23■■□□□ 1.95
SHOX2-204ENST00000483851 TMEM173Q86WV6 379 aaPredicted RBP27.23■■□□□ 1.95
SHOX2-204ENST00000483851 RSAD2Q8WXG1 361 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 TRIM43Q96BQ3 446 aaPredicted RBP27.23■■□□□ 1.95
SHOX2-204ENST00000483851 IGSF21Q96ID5 467 aa27.23■■□□□ 1.95
SHOX2-204ENST00000483851 RC3H2Q9HBD1 1191 aaKnown RBP27.23■■□□□ 1.95
SHOX2-204ENST00000483851 H3BRJ5 948 aa27.22■■□□□ 1.95
SHOX2-204ENST00000483851 CPB1P15086 417 aa27.22■■□□□ 1.95
SHOX2-204ENST00000483851 SKOR1P84550 965 aa27.22■■□□□ 1.95
SHOX2-204ENST00000483851 XRCC4Q13426 336 aa27.22■■□□□ 1.95
SHOX2-204ENST00000483851 BZW1Q7L1Q6 419 aaKnown RBP27.22■■□□□ 1.95
SHOX2-204ENST00000483851 MON1AQ86VX9 555 aa27.22■■□□□ 1.95
SHOX2-204ENST00000483851 CMTR2Q8IYT2 770 aaKnown RBP27.22■■□□□ 1.95
SHOX2-204ENST00000483851 CWC15Q9P013 229 aaKnown RBP27.22■■□□□ 1.95
SHOX2-204ENST00000483851 ANAPC5Q9UJX4 755 aa27.22■■□□□ 1.95
SHOX2-204ENST00000483851 PLAAQ9Y263 795 aa27.22■■□□□ 1.95
SHOX2-204ENST00000483851 IGLV3-25P01717 112 aa27.21■■□□□ 1.95
SHOX2-204ENST00000483851 CSF2RAP15509 400 aa27.21■■□□□ 1.95
SHOX2-204ENST00000483851 HCAR3P49019 387 aa27.21■■□□□ 1.95
SHOX2-204ENST00000483851 TRIP13Q15645 432 aaPredicted RBP27.21■■□□□ 1.95
SHOX2-204ENST00000483851 BTBD8Q5XKL5 378 aa27.21■■□□□ 1.95
SHOX2-204ENST00000483851 SLC8B1Q6J4K2 584 aa27.21■■□□□ 1.95
SHOX2-204ENST00000483851 LRRC31Q6UY01 552 aa27.21■■□□□ 1.95
SHOX2-204ENST00000483851 BCL7CQ8WUZ0 217 aaPredicted RBP27.21■■□□□ 1.95
SHOX2-204ENST00000483851 SPATA17Q96L03 361 aa27.21■■□□□ 1.95
SHOX2-204ENST00000483851 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP27.21■■□□□ 1.95
SHOX2-204ENST00000483851 MTRRQ9UBK8 725 aa27.21■■□□□ 1.95
SHOX2-204ENST00000483851 PLXNA3P51805 1871 aa27.21■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms