RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 BICRAQ9NZM4 1560 aa6.92□□□□□ -1.3
USP40-213ENST00000483216 DHHO43323 396 aa6.92□□□□□ -1.3
USP40-213ENST00000483216 PRAMEF2O60811 474 aa6.92□□□□□ -1.3
USP40-213ENST00000483216 TUBB4AP04350 444 aa6.92□□□□□ -1.3
USP40-213ENST00000483216 SRGAP2BP0DMP2 458 aa6.92□□□□□ -1.3
USP40-213ENST00000483216 CYP2A6P11509 494 aaPredicted RBP6.92□□□□□ -1.3
USP40-213ENST00000483216 BRD3Q15059 726 aa6.92□□□□□ -1.3
USP40-213ENST00000483216 TMEM196Q5HYL7 178 aa6.92□□□□□ -1.3
USP40-213ENST00000483216 VSTM1Q6UX27 236 aa6.92□□□□□ -1.3
USP40-213ENST00000483216 ZNF66Q6ZN08 573 aa6.92□□□□□ -1.3
USP40-213ENST00000483216 RASGRP3Q8IV61 690 aa6.92□□□□□ -1.3
USP40-213ENST00000483216 C18orf8Q96DM3 657 aa6.92□□□□□ -1.3
USP40-213ENST00000483216 SAP30LQ9HAJ7 183 aa6.92□□□□□ -1.3
USP40-213ENST00000483216 SEMA5BQ9P283 1151 aa6.92□□□□□ -1.3
USP40-213ENST00000483216 CDC23Q9UJX2 597 aa6.92□□□□□ -1.3
USP40-213ENST00000483216 TMEM232C9JQI7 657 aa6.91□□□□□ -1.3
USP40-213ENST00000483216 CLIC1O00299 241 aa6.91□□□□□ -1.3
USP40-213ENST00000483216 NTSR2O95665 410 aa6.91□□□□□ -1.3
USP40-213ENST00000483216 MBPP02686 304 aaPredicted RBP6.91□□□□□ -1.3
USP40-213ENST00000483216 CELA2AP08217 269 aa6.91□□□□□ -1.3
USP40-213ENST00000483216 DRD1P21728 446 aa6.91□□□□□ -1.3
USP40-213ENST00000483216 KCNB1Q14721 858 aa6.91□□□□□ -1.3
USP40-213ENST00000483216 STARD3Q14849 445 aa6.91□□□□□ -1.3
USP40-213ENST00000483216 MFSD13AQ14CX5 517 aa6.91□□□□□ -1.3
USP40-213ENST00000483216 ZNF813Q6ZN06 617 aa6.91□□□□□ -1.3
USP40-213ENST00000483216 ZNF398Q8TD17 642 aa6.91□□□□□ -1.3
USP40-213ENST00000483216 MUL1Q969V5 352 aa6.91□□□□□ -1.3
USP40-213ENST00000483216 PRR11Q96HE9 360 aaPredicted RBP6.91□□□□□ -1.3
USP40-213ENST00000483216 WDR12Q9GZL7 423 aaKnown RBP6.91□□□□□ -1.3
USP40-213ENST00000483216 SPATA31A1Q5TZJ5 1347 aa6.91□□□□□ -1.3
USP40-213ENST00000483216 UNC13AQ9UPW8 1703 aa6.9□□□□□ -1.3
USP40-213ENST00000483216 ABHD14A-ACY1A0A1B0GW23 586 aa6.9□□□□□ -1.3
USP40-213ENST00000483216 GOLGA6L3A6NEY3 463 aa6.9□□□□□ -1.3
USP40-213ENST00000483216 FYB1O15117 783 aa6.9□□□□□ -1.3
USP40-213ENST00000483216 MMP8P22894 467 aa6.9□□□□□ -1.3
USP40-213ENST00000483216 IL6STP40189 918 aaPredicted RBP6.9□□□□□ -1.3
USP40-213ENST00000483216 SRSF4Q08170 494 aaKnown RBP6.9□□□□□ -1.3
USP40-213ENST00000483216 SEMA3BQ13214 749 aa6.9□□□□□ -1.3
USP40-213ENST00000483216 MORC3Q14149 939 aa6.9□□□□□ -1.3
USP40-213ENST00000483216 IPO4Q8TEX9 1081 aaKnown RBP6.9□□□□□ -1.3
USP40-213ENST00000483216 PNISRQ8TF01 805 aaKnown RBP6.9□□□□□ -1.3
USP40-213ENST00000483216 DDB2Q92466 427 aa6.9□□□□□ -1.3
USP40-213ENST00000483216 HIC2Q96JB3 615 aa6.9□□□□□ -1.3
USP40-213ENST00000483216 SLC52A1Q9NWF4 448 aa6.9□□□□□ -1.3
USP40-213ENST00000483216 IGSF9Q9P2J2 1179 aa6.9□□□□□ -1.3
USP40-213ENST00000483216 LRCH1Q9Y2L9 728 aa6.9□□□□□ -1.3
USP40-213ENST00000483216 RSF1Q96T23 1441 aaPredicted RBP6.9□□□□□ -1.31
USP40-213ENST00000483216 PPP6CO00743 305 aa6.89□□□□□ -1.31
USP40-213ENST00000483216 FFAR2O15552 330 aa6.89□□□□□ -1.31
USP40-213ENST00000483216 CYP2D6P10635 497 aa6.89□□□□□ -1.31
USP40-213ENST00000483216 GALNSP34059 522 aa6.89□□□□□ -1.31
USP40-213ENST00000483216 GSTM5P46439 218 aa6.89□□□□□ -1.31
USP40-213ENST00000483216 TRIM71Q2Q1W2 868 aaKnown RBP6.89□□□□□ -1.31
USP40-213ENST00000483216 CCDC144NLQ6NUI1 221 aa6.89□□□□□ -1.31
USP40-213ENST00000483216 RANBP10Q6VN20 620 aa6.89□□□□□ -1.31
USP40-213ENST00000483216 PIK3AP1Q6ZUJ8 805 aa6.89□□□□□ -1.31
USP40-213ENST00000483216 TTC30AQ86WT1 665 aa6.89□□□□□ -1.31
USP40-213ENST00000483216 SKAP1Q86WV1 359 aa6.89□□□□□ -1.31
USP40-213ENST00000483216 GALNT16Q8N428 558 aa6.89□□□□□ -1.31
USP40-213ENST00000483216 C5orf34Q96MH7 638 aa6.89□□□□□ -1.31
USP40-213ENST00000483216 ADGRE3Q9BY15 652 aa6.89□□□□□ -1.31
USP40-213ENST00000483216 MAFFQ9ULX9 164 aa6.89□□□□□ -1.31
USP40-213ENST00000483216 J3KTA2 159 aa6.88□□□□□ -1.31
USP40-213ENST00000483216 PCDH17O14917 1159 aa6.88□□□□□ -1.31
USP40-213ENST00000483216 CTIFO43310 598 aaKnown RBP6.88□□□□□ -1.31
USP40-213ENST00000483216 NPPBP16860 134 aa6.88□□□□□ -1.31
USP40-213ENST00000483216 DUSP1P28562 367 aa6.88□□□□□ -1.31
USP40-213ENST00000483216 JAK3P52333 1124 aa6.88□□□□□ -1.31
USP40-213ENST00000483216 TNFAIP2Q03169 654 aa6.88□□□□□ -1.31
USP40-213ENST00000483216 BFSP2Q13515 415 aa6.88□□□□□ -1.31
USP40-213ENST00000483216 CSHL1Q14406 222 aa6.88□□□□□ -1.31
USP40-213ENST00000483216 CEP78Q5JTW2 689 aa6.88□□□□□ -1.31
USP40-213ENST00000483216 SPICE1Q8N0Z3 855 aa6.88□□□□□ -1.31
USP40-213ENST00000483216 VOPP1Q96AW1 172 aa6.88□□□□□ -1.31
USP40-213ENST00000483216 MPHOSPH6Q99547 160 aaKnown RBP6.88□□□□□ -1.31
USP40-213ENST00000483216 PLCB1Q9NQ66 1216 aa6.88□□□□□ -1.31
USP40-213ENST00000483216 FSCN3Q9NQT6 498 aa6.88□□□□□ -1.31
USP40-213ENST00000483216 WDR17Q8IZU2 1322 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 A0A087WV62 115 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 PNMA6EA0A0J9YXQ4 647 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 GXYLT2A0PJZ3 443 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 PIP5K1BO14986 540 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 TAF5LO75529 589 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 ANXA6P08133 673 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 MATN1P21941 496 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 EPHB2P29323 1055 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 IGHMBP2P38935 993 aaKnown RBP6.87□□□□□ -1.31
USP40-213ENST00000483216 RHBDL3P58872 404 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 WDR5P61964 334 aaKnown RBP6.87□□□□□ -1.31
USP40-213ENST00000483216 RAE1P78406 368 aaKnown RBP6.87□□□□□ -1.31
USP40-213ENST00000483216 AWAT1Q58HT5 328 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 MSANTD2Q6P1R3 559 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 PGBD2Q6P3X8 592 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 ZNF527Q8NB42 609 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 EIF3CQ99613 913 aaKnown RBP6.87□□□□□ -1.31
USP40-213ENST00000483216 PAAF1Q9BRP4 392 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 RNF26Q9BY78 433 aaPredicted RBP6.87□□□□□ -1.31
USP40-213ENST00000483216 ABHD10Q9NUJ1 306 aa6.87□□□□□ -1.31
USP40-213ENST00000483216 MAGED2Q9UNF1 606 aaPredicted RBP6.87□□□□□ -1.31
USP40-213ENST00000483216 PCDHB2Q9Y5E7 798 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms