RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 GABRG3Q99928 467 aa12.73□□□□□ -0.37
SQSTM1-207ENST00000481335 EDEM2Q9BV94 578 aa12.73□□□□□ -0.37
SQSTM1-207ENST00000481335 TSPAN16Q9UKR8 245 aa12.73□□□□□ -0.37
SQSTM1-207ENST00000481335 EPG5Q9HCE0 2579 aa12.73□□□□□ -0.37
SQSTM1-207ENST00000481335 CACNA1EQ15878 2313 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 KHNYNO15037 678 aaKnown RBP12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 AP5Z1O43299 807 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 LATS1O95835 1130 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 GNA14O95837 355 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 ZBED1O96006 694 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 CYBBP04839 570 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 FMO5P49326 533 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 TKTL1P51854 596 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 YWHAGP61981 247 aaKnown RBP eCLIP12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 EIF4HQ15056 248 aaKnown RBP12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 MAP7D1Q3KQU3 841 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 EMC10Q5UCC4 262 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 PEAR1Q5VY43 1037 aaPredicted RBP12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 TPGS1Q6ZTW0 290 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 RSRC2Q7L4I2 434 aaKnown RBP12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 TTC30AQ86WT1 665 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 MIB1Q86YT6 1006 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 FAM217AQ8IXS0 508 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 CHPFQ8IZ52 775 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 UBR7Q8N806 425 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 HMGB4Q8WW32 186 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 KCTD13Q8WZ19 329 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 TATDN2Q93075 761 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 NT5C1BQ96P26 610 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 LSM14BQ9BX40 385 aaKnown RBP12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 SLC2A11Q9BYW1 496 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 IRX2Q9BZI1 471 aaPredicted RBP12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 LRRC4Q9HBW1 653 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 CNGB3Q9NQW8 809 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 MARCH2Q9P0N8 246 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 RASAL2Q9UJF2 1139 aa12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 HBS1LQ9Y450 684 aaKnown RBP12.72□□□□□ -0.37
SQSTM1-207ENST00000481335 LNP1A1A4G5 178 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 TRIM49BA6NDI0 452 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 O00370 1275 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 MDM4O15151 490 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 CISD3P0C7P0 127 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 BCKDHBP21953 392 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 CORO1AP31146 461 aaKnown RBP12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 MARSP56192 900 aaKnown RBP12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 GCNT1Q02742 428 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 PDE4CQ08493 712 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 EFEMP1Q12805 493 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 LMAN2Q12907 356 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 CCDC6Q16204 474 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 GOLGA7BQ2TAP0 167 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 CCDC40Q4G0X9 1142 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 DAB2IPQ5VWQ8 1189 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 FYB2Q5VWT5 728 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 EGFLAMQ63HQ2 1017 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 SMYD5Q6GMV2 418 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 LCLAT1Q6UWP7 414 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 SYT12Q8IV01 421 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 UCMAQ8WVF2 138 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 IPO9Q96P70 1041 aaKnown RBP12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 CD248Q9HCU0 757 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 ABCC13Q9NSE7 274 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 NUDT5Q9UKK9 219 aa12.71□□□□□ -0.37
SQSTM1-207ENST00000481335 CACNA1BQ00975 2339 aa12.71□□□□□ -0.38
SQSTM1-207ENST00000481335 ASCC3Q8N3C0 2202 aaKnown RBP12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 CHD8Q9HCK8 2581 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 A0A1W2PQF6 199 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 ANTXRLA6NF34 631 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 PRRT4C9JH25 899 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 MAP3K13O43283 966 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 KLKB1P03952 638 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 CD19P15391 556 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 GABRG2P18507 467 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 DHPSP49366 369 aaPredicted RBP12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 HARS2P49590 506 aaKnown RBP12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 ADIGQ0VDE8 80 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 ENPP2Q13822 863 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 STARD3Q14849 445 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 TRIP4Q15650 581 aaPredicted RBP12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 MEA1Q16626 185 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 PKDCCQ504Y2 493 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 LYSMD4Q5XG99 296 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 TTI2Q6NXR4 508 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 ANKS1BQ7Z6G8 1248 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 METTL3Q86U44 580 aaKnown RBP12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 SIX6OS1Q8N1H7 587 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 PGBD3Q8N328 593 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 ZNF557Q8N988 423 aaPredicted RBP12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 TRIML1Q8N9V2 468 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 CEP76Q8TAP6 659 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 IPO4Q8TEX9 1081 aaKnown RBP12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 RNF139Q8WU17 664 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 IRGQQ8WZA9 623 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 NUSAP1Q9BXS6 441 aaKnown RBP12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 ULBP1Q9BZM6 244 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 TMEM9BQ9NQ34 198 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 RXFP3Q9NSD7 469 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 STOML2Q9UJZ1 356 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 MAN1B1Q9UKM7 699 aa12.7□□□□□ -0.38
SQSTM1-207ENST00000481335 AGO1Q9UL18 857 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms