RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 DEXIO95424 95 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 THEGLP0DJG4 465 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 XBP1P17861 261 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 NPTX2P47972 431 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 TUBP50607 506 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 NOP14P78316 857 aaKnown RBP8.54□□□□□ -1.04
USP54-211ENST00000474929 ARID5AQ03989 594 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 KRT32Q14532 448 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 TMEM132DQ14C87 1099 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 CALCRLQ16602 461 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 WSCD1Q658N2 575 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 CREB3L3Q68CJ9 461 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 HAUS3Q68CZ6 603 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 RBM44Q6ZP01 1051 aaKnown RBP8.54□□□□□ -1.04
USP54-211ENST00000474929 IQCHQ86VS3 1027 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 SRRM1Q8IYB3 904 aaKnown RBP8.54□□□□□ -1.04
USP54-211ENST00000474929 MAPK15Q8TD08 544 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 POM121Q96HA1 1249 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 HEXIM2Q96MH2 286 aaKnown RBP8.54□□□□□ -1.04
USP54-211ENST00000474929 SLC6A18Q96N87 628 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 FUCA2Q9BTY2 467 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 TRIM9Q9C026 710 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 MYH10P35580 1976 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 MTORP42345 2549 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 ARID1BQ8NFD5 2236 aaPredicted RBP8.53□□□□□ -1.04
USP54-211ENST00000474929 A0A1B0GVM2 712 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 LRRC72A6NJI9 287 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 KPNA7A9QM74 516 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 SCAMP3O14828 347 aaKnown RBP8.53□□□□□ -1.04
USP54-211ENST00000474929 PPEF2O14830 753 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 SIGLEC6O43699 453 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 TNFSF15O95150 251 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 ABL1P00519 1130 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 EPHX1P07099 455 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 ACO1P21399 889 aaKnown RBP8.53□□□□□ -1.04
USP54-211ENST00000474929 SCP2P22307 547 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 NUDT1P36639 197 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 PEX3P56589 373 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 SPAG1Q07617 926 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 ENOX2Q16206 610 aaKnown RBP8.53□□□□□ -1.04
USP54-211ENST00000474929 TDRD10Q5VZ19 366 aaKnown RBP8.53□□□□□ -1.04
USP54-211ENST00000474929 SERPINA13PQ6UXR4 307 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 USP30Q70CQ3 517 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 ANKS1BQ7Z6G8 1248 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 CACUL1Q86Y37 369 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 TMEM25Q86YD3 366 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 BBS7Q8IWZ6 715 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 SMC5Q8IY18 1101 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 C9orf43Q8TAL5 461 aaPredicted RBP8.53□□□□□ -1.04
USP54-211ENST00000474929 CATSPER2Q96P56 530 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 ORAI3Q9BRQ5 295 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 DUSP23Q9BVJ7 150 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 SRRTQ9BXP5 876 aaKnown RBP8.53□□□□□ -1.04
USP54-211ENST00000474929 RNF38Q9H0F5 515 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 GZF1Q9H116 711 aaPredicted RBP8.53□□□□□ -1.04
USP54-211ENST00000474929 TMLHEQ9NVH6 421 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 DDX43Q9NXZ2 648 aaKnown RBP8.53□□□□□ -1.04
USP54-211ENST00000474929 PLAAQ9Y263 795 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 C2CD2Q9Y426 696 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 PCDHB11Q9Y5F2 797 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 SPG11Q96JI7 2443 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 CELSR2Q9HCU4 2923 aa8.53□□□□□ -1.04
USP54-211ENST00000474929 LACTBL1A8MY62 500 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 WASH3PC4AMC7 463 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 TLR4O00206 839 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 TIMM44O43615 452 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 HUS1O60921 280 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 IGHV4-34P06331 123 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 ADRB2P07550 413 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 SLC6A4P31645 630 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 LHX1P48742 406 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 SMTNP53814 917 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 POLE2P56282 527 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 EXOSC10Q01780 885 aaKnown RBP8.52□□□□□ -1.05
USP54-211ENST00000474929 NUCB1Q02818 461 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 CAMK2GQ13555 558 aaPredicted RBP8.52□□□□□ -1.05
USP54-211ENST00000474929 ZNF234Q14588 700 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 CPLX2Q6PUV4 134 aaKnown RBP8.52□□□□□ -1.05
USP54-211ENST00000474929 HEATR4Q86WZ0 1026 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 EFCAB3Q8N7B9 438 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 GALNT11Q8NCW6 608 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 TIPINQ9BVW5 301 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 NACA2Q9H009 215 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 ASB7Q9H672 318 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 MAGEC2Q9UBF1 373 aaPredicted RBP8.52□□□□□ -1.05
USP54-211ENST00000474929 ENTPD2Q9Y5L3 495 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 DNHD1Q96M86 4753 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 MED13Q9UHV7 2174 aa8.52□□□□□ -1.05
USP54-211ENST00000474929 NAV3Q8IVL0 2385 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 PLXNA2O75051 1894 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 A0A1W2PR77 199 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 A1L4Q6 167 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 NEMP2A6NFY4 417 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 TMX2-CTNND1H3BSU7 103 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 TRIM24O15164 1050 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 OGTO15294 1046 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 NEMFO60524 1076 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 RPA1P27694 616 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 CD82P27701 267 aa8.51□□□□□ -1.05
USP54-211ENST00000474929 CCR5P51681 352 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms