RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TMEM270Q6UE05 265 aa16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 Q6ZNB5 142 aa16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 RSRC2Q7L4I2 434 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 MDGA1Q8NFP4 955 aa16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 KAT5Q92993 513 aa16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 EDEM2Q9BV94 578 aa16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 LRRC4Q9HBW1 653 aa16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 CNOT1A5YKK6 2376 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 TNRC6BQ9UPQ9 1833 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 A0A0A0MRY4 1105 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 O00370 1275 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 CACNG3O60359 315 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 ALDH1A2O94788 518 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 KCNK5O95279 499 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 ZBED1O96006 694 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 CORO1AP31146 461 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 COG7P83436 770 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 ADIGQ0VDE8 80 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 KCNH2Q12809 1159 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 CAMK4Q16566 473 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 HSF5Q4G112 596 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 USP39Q53GS9 565 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 FOXR2Q6PJQ5 311 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 NUDT18Q6ZVK8 323 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 RASSF3Q86WH2 238 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 ZNF276Q8N554 614 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 ZNF513Q8N8E2 541 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 CNOT6LQ96LI5 555 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 IPO9Q96P70 1041 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 SRRTQ9BXP5 876 aaKnown RBP16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 POLMQ9NP87 494 aaPredicted RBP16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 PLK2Q9NYY3 685 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 MARK1Q9P0L2 795 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 MARCH2Q9P0N8 246 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 BCCIPQ9P287 314 aaKnown RBP eCLIP16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 WDR35Q9P2L0 1181 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 STRIP2Q9ULQ0 834 aa16.48■□□□□ 0.23
CCDC88B-205ENST00000472524 TCRBV21S2A2A0A5A6 115 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 SLC12A8A0AV02 714 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 LNP1A1A4G5 178 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 C4orf47A7E2U8 309 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 PMM2O15305 246 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 P4HA2O15460 535 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 ADAM23O75077 832 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 CALCAP01258 141 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 KLKB1P03952 638 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 BRD2P25440 801 aaKnown RBP16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 WASP42768 502 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 UBE2HP62256 183 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 PMS2CLQ68D20 193 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 PSAPL1Q6NUJ1 521 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 TOGARAM2Q6ZUX3 1019 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 RRAGAQ7L523 313 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 ARHGEF19Q8IW93 802 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 TRIM59Q8IWR1 403 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 SIX6OS1Q8N1H7 587 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 HMGB4Q8WW32 186 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 TFAP2BQ92481 460 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 ZNF510Q9Y2H8 683 aa16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.47■□□□□ 0.23
CCDC88B-205ENST00000472524 RNF225M0QZC1 329 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 PIK3R2O00459 728 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 GNA14O95837 355 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 AFPP02771 609 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 PAEPP09466 180 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 SETSIPP0DME0 302 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 LCP1P13796 627 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 RGS7P49802 495 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 SHC2P98077 582 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 EGFLAMQ63HQ2 1017 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 PM20D1Q6GTS8 502 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 BHLHA9Q7RTU4 235 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 TRMT11Q7Z4G4 463 aaKnown RBP16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 DENND1CQ8IV53 801 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 PGBD3Q8N328 593 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 TRIML1Q8N9V2 468 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 RBBP8NLQ8NC74 664 aaPredicted RBP16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 LMO3Q8TAP4 145 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 ERLEC1Q96DZ1 483 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 DCLK3Q9C098 648 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 CHMP5Q9NZZ3 219 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 KIAA1468Q9P260 1216 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 KIAA1257Q9ULG3 409 aa16.46■□□□□ 0.23
CCDC88B-205ENST00000472524 USP24Q9UPU5 2620 aa16.46■□□□□ 0.22
CCDC88B-205ENST00000472524 CFAP47Q6ZTR5 3102 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 MAP1BP46821 2468 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 PATE3B3GLJ2 98 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 PRRT4C9JH25 899 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 M0QYV0 167 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 GIPC1O14908 333 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 FGFR1OPO95684 399 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 HOXB2P14652 356 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 DGKGP49619 791 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 MARSP56192 900 aaKnown RBP16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 PKDCCQ504Y2 493 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 LCLAT1Q6UWP7 414 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 C11orf74Q86VG3 221 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 CREBRFQ8IUR6 639 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 FMNL3Q8IVF7 1028 aa16.45■□□□□ 0.22
CCDC88B-205ENST00000472524 EHBP1Q8NDI1 1231 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms