RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SNX27Q96L92 541 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 TRPV6Q9H1D0 765 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 PRDM12Q9H4Q4 367 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 FAM105AQ9NUU6 356 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 PMM2O15305 246 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 METTL18O95568 372 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 AKR1A1P14550 325 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 CPB1P15086 417 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 DRD4P21917 467 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 MGAT1P26572 445 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 CCND3P30281 292 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 ATICP31939 592 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 LCLAT1Q6UWP7 414 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 SPATA6LQ8N4H0 392 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 SHCBP1Q8NEM2 672 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 IPMKQ8NFU5 416 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 PRCCQ92733 491 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 DNAI2Q9GZS0 605 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 ADAM7Q9H2U9 754 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 ECT2Q9H8V3 914 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 PLEKHA5Q9HAU0 1116 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 PADI3Q9ULW8 664 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 C2CD2Q9Y426 696 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 TTC3P53804 2025 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 TTC24A2A3L6 582 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 DNM1LO00429 736 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 PSMB4P28070 264 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 GLRBP48167 497 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 CLDN10P78369 228 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 CAV1Q03135 178 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 GRB14Q14449 540 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 KCNA10Q16322 511 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 ANKRD20A3Q5VUR7 823 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 RYBPQ8N488 228 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 COLGALT1Q8NBJ5 622 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 RNF139Q8WU17 664 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 AZIN2Q96A70 460 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 MOCOSQ96EN8 888 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 SCYL1Q96KG9 808 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 SERPINB12Q96P63 405 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 PSMC3IPQ9P2W1 217 aaPredicted RBP14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 STAP1Q9ULZ2 295 aa14.23□□□□□ -0.13
CCDC88A-211ENST00000471947 COL11A1P12107 1806 aaPredicted RBP14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 SLC15A5A6NIM6 579 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 NUDT17P0C025 328 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 ERVK-10P10266 1014 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 DRG2P55039 364 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 CCDC6Q16204 474 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 NRDE2Q9H7Z3 1164 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 GPBP1L1Q9HC44 474 aaPredicted RBP14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 ARMCX1Q9P291 453 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 NME7Q9Y5B8 376 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 TSPAN3O60637 253 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 CBX6O95503 412 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 MAMDC4Q6UXC1 1216 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 TRPM8Q7Z2W7 1104 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 CCDC91Q7Z6B0 441 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 ANKRD23Q86SG2 305 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 ZNF410Q86VK4 478 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 PDCD6IPQ8WUM4 868 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 ZNF669Q96BR6 464 aaPredicted RBP14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 PGM2Q96G03 612 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 PCED1BQ96HM7 432 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 CYTH2Q99418 400 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 WDCPQ9H6R7 721 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 MPP6Q9NZW5 540 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 HAO1Q9UJM8 370 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 TRDMT1O14717 391 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 GEMIN4P57678 1058 aaKnown RBP14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 MORF4L2Q15014 288 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 CYP1B1Q16678 543 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 FYB2Q5VWT5 728 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 BTBD8Q5XKL5 378 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 VSTM1Q6UX27 236 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 PHTF1Q9UMS5 762 aa14.22□□□□□ -0.13
CCDC88A-211ENST00000471947 MFSD11O43934 449 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 ITGB1P05556 798 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 PROZP22891 400 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 FOXN2P32314 431 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 CCL23P55773 120 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 MGAT5BQ3V5L5 792 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 RNASEH2BQ5TBB1 312 aaKnown RBP14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 GPRIN1Q7Z2K8 1008 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 CCHCR1Q8TD31 782 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 KCTD15Q96SI1 283 aaPredicted RBP14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 SPON2Q9BUD6 331 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 TKTL2Q9H0I9 626 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 HCSTQ9UBK5 93 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 PCDHGC3Q9UN70 934 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 USP15Q9Y4E8 981 aaPredicted RBP14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 RPS6KL1Q9Y6S9 549 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 NUP205Q92621 2012 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 TCRBV9S1A1TA0A576 114 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 A6NNZ2 444 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 RNF103O00237 685 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 ATXN3P54252 364 aaPredicted RBP14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 TUBB8Q3ZCM7 444 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 FUKQ8N0W3 1084 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 ATAD1Q8NBU5 361 aa14.21□□□□□ -0.13
CCDC88A-211ENST00000471947 MCUQ8NE86 351 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms