RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 SPAG1Q07617 926 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 MGAT3Q09327 533 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 FZD5Q13467 585 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 BFSP2Q13515 415 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 LRRC26Q2I0M4 334 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 TRIM71Q2Q1W2 868 aaKnown RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 EDRF1Q3B7T1 1238 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 ZNF568Q3ZCX4 644 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 VWA3BQ502W6 1294 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 ZCWPW2Q504Y3 356 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 TMEM177Q53S58 311 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 FIGNQ5HY92 759 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 ZBTB41Q5SVQ8 909 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 LMBRD2Q68DH5 695 aaPredicted RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 TWF2Q6IBS0 349 aaKnown RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 LRRC55Q6ZSA7 311 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 TSHZ1Q6ZSZ6 1077 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 UBE2R2Q712K3 238 aaPredicted RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 OVCH1Q7RTY7 1134 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 FRMD5Q7Z6J6 570 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 DEFB128Q7Z7B8 93 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 FAM228AQ86W67 206 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 MIB1Q86YT6 1006 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 CBWD2Q8IUF1 395 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 FAM126BQ8IXS8 530 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 CISD2Q8N5K1 135 aaKnown RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 POU5F2Q8N7G0 328 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 RNF169Q8NCN4 708 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 DDX1Q92499 740 aaKnown RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 FAM84AQ96KN4 292 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 CTAGE1Q96RT6 745 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 ADPGKQ9BRR6 497 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 TUBGCP2Q9BSJ2 902 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 EIF2AQ9BY44 585 aaKnown RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 TRIM6Q9C030 488 aaPredicted RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 XPO4Q9C0E2 1151 aaKnown RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 HAPLN2Q9GZV7 340 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 HSD3B7Q9H2F3 369 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 PDZD7Q9H5P4 517 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 AGO3Q9H9G7 860 aaKnown RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 RPF1Q9H9Y2 349 aaKnown RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 KCNK12Q9HB15 430 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 SMURF1Q9HCE7 757 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 DMAC2Q9NW81 257 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 CGNQ9P2M7 1197 aaKnown RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 ARMCX3Q9UH62 379 aaPredicted RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 LIMA1Q9UHB6 759 aaKnown RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 PADI3Q9ULW8 664 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 SRPK3Q9UPE1 567 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 PIN4Q9Y237 131 aaKnown RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 TNFSF13BQ9Y275 285 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 UMODL1Q5DID0 1318 aa4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 TRIP12Q14669 1992 aaPredicted RBP4.4□□□□□ -1.71
TMEM39A-204ENST00000468545 ARID2Q68CP9 1835 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 LOXHD1Q8IVV2 1947 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 A0A0B4J269 797 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 KRTAP4-8A0A0G2JLE6 195 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 TCRBV5S2A0A599 114 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 LACTBL1A8MY62 500 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 OGTO15294 1046 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 SLC16A3O15427 465 aaKnown RBP4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 TOM1L1O75674 476 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 LDHAP00338 332 aaKnown RBP4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 CD4P01730 458 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 PIGRP01833 764 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 AFPP02771 609 aaKnown RBP4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 AMY2AP04746 511 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 TPM3P06753 285 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 ASGR2P07307 311 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 ADRB2P07550 413 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 CLTBP09497 229 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 STAG3L1P0CL83 205 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 MCF2P10911 925 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 COL6A1P12109 1028 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 ZNF18P17022 549 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 KRT15P19012 456 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 TNNI1P19237 187 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 AMY2BP19961 511 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 SCP2P22307 547 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 AKAP5P24588 427 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 EEF1GP26641 437 aaKnown RBP4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 PMLP29590 882 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 AXLP30530 894 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 HOXA11P31270 313 aaPredicted RBP4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 HOXC8P31273 242 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 DEKP35659 375 aaKnown RBP4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 GCLMP48507 274 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 KLK7P49862 253 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 VAMP7P51809 220 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 EPHA5P54756 1037 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 DLG4P78352 724 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 MCL1Q07820 350 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 CYP24A1Q07973 514 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 MESP2Q0VG99 397 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 LRMPQ12912 555 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 MYBPC2Q14324 1141 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 LPIN1Q14693 890 aa4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 NOLC1Q14978 699 aaKnown RBP eCLIP4.39□□□□□ -1.71
TMEM39A-204ENST00000468545 SNRNP35Q16560 246 aaKnown RBP4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms