RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ZNF638Q14966 1978 aaKnown RBP9.27□□□□□ -0.93
SYNE1-217ENST00000466159 PDCD11Q14690 1871 aaKnown RBP9.27□□□□□ -0.93
SYNE1-217ENST00000466159 DCTN3O75935 186 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 CBX6O95503 412 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 DHRS4L1P0CG22 281 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 T-ENOLP0DO92 83 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 ALADP13716 330 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 GOT1P17174 413 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 TKTP29401 623 aaKnown RBP9.27□□□□□ -0.93
SYNE1-217ENST00000466159 MAGEA6P43360 314 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 PREPLQ4J6C6 727 aaPredicted RBP9.27□□□□□ -0.93
SYNE1-217ENST00000466159 WLSQ5T9L3 541 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 ZNF449Q6P9G9 518 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 TRMT10BQ6PF06 316 aaKnown RBP9.27□□□□□ -0.93
SYNE1-217ENST00000466159 UNC5AQ6ZN44 842 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 NLRP9Q7RTR0 991 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 FAM131BQ86XD5 332 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 CDKL3Q8IVW4 592 aaPredicted RBP9.27□□□□□ -0.93
SYNE1-217ENST00000466159 VPS52Q8N1B4 723 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 AGAP11Q8TF27 550 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 UTP4Q969X6 686 aaKnown RBP9.27□□□□□ -0.93
SYNE1-217ENST00000466159 PTPN18Q99952 460 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 SNX25Q9H3E2 840 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 TMPRSS4Q9NRS4 437 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 TXLNGQ9NUQ3 528 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 DTLQ9NZJ0 730 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 MAD1L1Q9Y6D9 718 aa9.27□□□□□ -0.93
SYNE1-217ENST00000466159 SMIM35A0A1B0GVV1 85 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 MBLAC1A4D2B0 266 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-217ENST00000466159 TREHO43280 583 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 GCATO75600 419 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 F2P00734 622 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 BGNP21810 368 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 IGFBP6P24592 240 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-217ENST00000466159 SLC8A1P32418 973 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 RPL34P49207 117 aaKnown RBP9.26□□□□□ -0.93
SYNE1-217ENST00000466159 PITX1P78337 314 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-217ENST00000466159 CBLBQ13191 982 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 BMPR2Q13873 1038 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 SNX17Q15036 470 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 TAF1BQ53T94 588 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-217ENST00000466159 TTC39BQ5VTQ0 682 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-217ENST00000466159 FYB2Q5VWT5 728 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 NCBP2-AS2Q69YL0 99 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 ANKRD23Q86SG2 305 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 MTDHQ86UE4 582 aaKnown RBP9.26□□□□□ -0.93
SYNE1-217ENST00000466159 ARRDC4Q8NCT1 418 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 APPL2Q8NEU8 664 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 SIGLEC10Q96LC7 697 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 NCAPGQ9BPX3 1015 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 FRMD8Q9BZ67 464 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-217ENST00000466159 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.26□□□□□ -0.93
SYNE1-217ENST00000466159 SYNJ2BP-COX16A0A087WUM0 186 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 A0A0G2JND7 137 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 ZNF487B1APH4 448 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 CLDN5O00501 218 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 C2CD2LO14523 706 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 BEST1O76090 585 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 CD4P01730 458 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 APOEP02649 317 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 CSH1P0DML2 217 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 CSH2P0DML3 217 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 NEFHP12036 1026 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 PRKCHP24723 683 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 CDC42EP1Q00587 391 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 MFSD10Q14728 455 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 UBXN11Q5T124 520 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 PIGZQ86VD9 579 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 OSTM1Q86WC4 334 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 DEFB106AQ8N104 65 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 MCUQ8NE86 351 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 FAM149B1Q96BN6 582 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 SRPK1Q96SB4 655 aaKnown RBP9.26□□□□□ -0.93
SYNE1-217ENST00000466159 LGMNQ99538 433 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 TSSK1BQ9BXA7 367 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 GDAP2Q9NXN4 497 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 COX16Q9P0S2 106 aa9.26□□□□□ -0.93
SYNE1-217ENST00000466159 GNEQ9Y223 722 aaKnown RBP9.26□□□□□ -0.93
SYNE1-217ENST00000466159 GLTPD2A6NH11 291 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 COPEO14579 308 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 TRDMT1O14717 391 aaKnown RBP9.25□□□□□ -0.93
SYNE1-217ENST00000466159 SNRPAP09012 282 aaKnown RBP9.25□□□□□ -0.93
SYNE1-217ENST00000466159 TROVE2P10155 538 aaKnown RBP eCLIP9.25□□□□□ -0.93
SYNE1-217ENST00000466159 VAV1P15498 845 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 ACAT1P24752 427 aaKnown RBP9.25□□□□□ -0.93
SYNE1-217ENST00000466159 MAGEA3P43357 314 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 NR2C2P49116 596 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 TAF6P49848 677 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 LILRA4P59901 499 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 ADIGQ0VDE8 80 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 OLFML2BQ68BL8 750 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 HEATR6Q6AI08 1181 aaKnown RBP9.25□□□□□ -0.93
SYNE1-217ENST00000466159 DENND5BQ6ZUT9 1274 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 ARCQ7LC44 396 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 ADGRF2Q8IZF7 708 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 SLC7A6OSQ96CW6 309 aaPredicted RBP9.25□□□□□ -0.93
SYNE1-217ENST00000466159 STAMBPL1Q96FJ0 436 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 QKIQ96PU8 341 aaKnown RBP eCLIP9.25□□□□□ -0.93
SYNE1-217ENST00000466159 SLC13A1Q9BZW2 595 aa9.25□□□□□ -0.93
SYNE1-217ENST00000466159 LRMDAQ9H2I8 198 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms