RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 NGRNQ9NPE2 291 aaKnown RBP7.93□□□□□ -1.14
USP54-210ENST00000466048 FAM105AQ9NUU6 356 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 AMACRQ9UHK6 382 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 ZMYND8Q9ULU4 1186 aaPredicted RBP7.93□□□□□ -1.14
USP54-210ENST00000466048 USP15Q9Y4E8 981 aaPredicted RBP7.93□□□□□ -1.14
USP54-210ENST00000466048 ORC6Q9Y5N6 252 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 H0Y3Z8 333 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 FSCN2O14926 492 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 KRT1P04264 644 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 WEE2P0C1S8 567 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 COILP38432 576 aaPredicted RBP7.93□□□□□ -1.14
USP54-210ENST00000466048 HARS2P49590 506 aaKnown RBP7.93□□□□□ -1.14
USP54-210ENST00000466048 GSCP56915 257 aaPredicted RBP7.93□□□□□ -1.14
USP54-210ENST00000466048 TUSC3Q13454 348 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 FSCBQ5H9T9 825 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 PPM1LQ5SGD2 360 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 RARS2Q5T160 578 aaKnown RBP7.93□□□□□ -1.14
USP54-210ENST00000466048 CST9Q5W186 159 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 JAMLQ86YT9 394 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 ZDHHC17Q8IUH5 632 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 WDR75Q8IWA0 830 aaKnown RBP7.93□□□□□ -1.14
USP54-210ENST00000466048 C1orf131Q8NDD1 294 aaKnown RBP7.93□□□□□ -1.14
USP54-210ENST00000466048 ZBTB10Q96DT7 871 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 SEC16BQ96JE7 1060 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 LRRC19Q9H756 370 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 SEPT3Q9UH03 358 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 ANAPC5Q9UJX4 755 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 CCDC22O60826 627 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 BAIAP3O94812 1187 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 CST3P01034 146 aaPredicted RBP7.93□□□□□ -1.14
USP54-210ENST00000466048 MT-ND3P03897 115 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 EDN1P05305 212 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 ZNF865P0CJ78 1059 aaPredicted RBP7.93□□□□□ -1.14
USP54-210ENST00000466048 GFAPP14136 432 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 SERPINB10P48595 397 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 KDM7AQ6ZMT4 941 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 TRPM8Q7Z2W7 1104 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 DNAAF5Q86Y56 855 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 NIPA2Q8N8Q9 360 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 ATP6V0D2Q8N8Y2 350 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 C1orf127Q8N9H9 656 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 ATL2Q8NHH9 583 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 PPWD1Q96BP3 646 aaKnown RBP7.93□□□□□ -1.14
USP54-210ENST00000466048 SLC9A7Q96T83 725 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 MINDY3Q9H8M7 445 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 PPCSQ9HAB8 311 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 SNTG2Q9NY99 539 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 CILPO75339 1184 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 VHLP40337 213 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 SLC11A2P49281 568 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 CARSP49589 748 aaKnown RBP7.93□□□□□ -1.14
USP54-210ENST00000466048 INAQ16352 499 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 SPATA21Q7Z572 469 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 POLNQ7Z5Q5 900 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 CDR2LQ86X02 465 aaPredicted RBP7.93□□□□□ -1.14
USP54-210ENST00000466048 RFX6Q8HWS3 928 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 KIAA2013Q8IYS2 634 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 DDI1Q8WTU0 396 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 SLCO2A1Q92959 643 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 SNX27Q96L92 541 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 DCLK3Q9C098 648 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 XYLT2Q9H1B5 865 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 ADAMTS10Q9H324 1103 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 TMEM161AQ9NX61 479 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 KLK14Q9P0G3 267 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 BAG5Q9UL15 447 aa7.93□□□□□ -1.14
USP54-210ENST00000466048 IQANK1A0A1B0GTG1 560 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 EXOC1LA0A1B0GW35 172 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 SIGLEC16A6NMB1 481 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 AP3B1O00203 1094 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 RECQL4O94761 1208 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 SERPINB3P29508 390 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 ITKQ08881 620 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 ITIH4Q14624 930 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 MMEL1Q495T6 779 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 DNAL1Q4LDG9 190 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 KLC3Q6P597 504 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 KCTD6Q8NC69 237 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 B4GALNT2Q8NHY0 566 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 HDAC7Q8WUI4 952 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 ALG3Q92685 438 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 MIEF2Q96C03 454 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 THAP11Q96EK4 314 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 UNC93B1Q9H1C4 597 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 TRPC7Q9HCX4 862 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 DYRK4Q9NR20 520 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 TUBA8Q9NY65 449 aaPredicted RBP7.92□□□□□ -1.14
USP54-210ENST00000466048 WHRNQ9P202 907 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 INSL6Q9Y581 213 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 TMEM191CA6NGB0 347 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 SRRM3A6NNA2 597 aaPredicted RBP7.92□□□□□ -1.14
USP54-210ENST00000466048 H7C0C1 242 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 GPC4O75487 556 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 ITIH2P19823 946 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 CD52P31358 61 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 ATP5OP48047 213 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 INCA1Q0VD86 236 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 CCNG2Q16589 344 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 SLC10A6Q3KNW5 377 aa7.92□□□□□ -1.14
USP54-210ENST00000466048 C1orf146Q5VVC0 180 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms