RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 O00370 1275 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 SLC30A4O14863 429 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 ADAM23O75077 832 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 PAEPP09466 180 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 ZNF806P0C7X5 589 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 HOXB2P14652 356 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 HNRNPLP14866 589 aaKnown RBP eCLIP14.62□□□□□ -0.07
USP4-206ENST00000461553 BMP6P22004 513 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 CHKAP35790 457 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 STX17P56962 302 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 CREB5Q02930 508 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 SF3A2Q15428 464 aaKnown RBP14.62□□□□□ -0.07
USP4-206ENST00000461553 STILQ15468 1287 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 EMC10Q5UCC4 262 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 PGBD3Q8N328 593 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 TRIML1Q8N9V2 468 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 PLD4Q96BZ4 506 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 KIAA1257Q9ULG3 409 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 INVSQ9Y283 1065 aa14.62□□□□□ -0.07
USP4-206ENST00000461553 SLC12A8A0AV02 714 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 TULP2O00295 520 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 TRIM24O15164 1050 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 GDF9O60383 454 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 FGFR1OPO95684 399 aaKnown RBP14.61□□□□□ -0.07
USP4-206ENST00000461553 AFPP02771 609 aaKnown RBP14.61□□□□□ -0.07
USP4-206ENST00000461553 CYBBP04839 570 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 BCKDHBP21953 392 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 UBE2HP62256 183 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 PLA2G2CQ5R387 149 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 EGFLAMQ63HQ2 1017 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 IL31Q6EBC2 164 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 PM20D1Q6GTS8 502 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 CYP2U1Q7Z449 544 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 CHPFQ8IZ52 775 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 OLIG1Q8TAK6 271 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 UBA3Q8TBC4 463 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 RNF139Q8WU17 664 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 PLK2Q9NYY3 685 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 STARD13Q9Y3M8 1113 aa14.61□□□□□ -0.07
USP4-206ENST00000461553 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.61□□□□□ -0.07
USP4-206ENST00000461553 DCDC2BA2VCK2 349 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 ZBTB24O43167 697 aaPredicted RBP14.6□□□□□ -0.07
USP4-206ENST00000461553 BRD2P25440 801 aaKnown RBP14.6□□□□□ -0.07
USP4-206ENST00000461553 NTSR1P30989 418 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 DHPSP49366 369 aaPredicted RBP14.6□□□□□ -0.07
USP4-206ENST00000461553 LIMK1P53667 647 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 MARSP56192 900 aaKnown RBP14.6□□□□□ -0.07
USP4-206ENST00000461553 GCNT1Q02742 428 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 KCNH2Q12809 1159 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 BYSLQ13895 437 aaKnown RBP14.6□□□□□ -0.07
USP4-206ENST00000461553 SDE2Q6IQ49 451 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 LCLAT1Q6UWP7 414 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 TOGARAM2Q6ZUX3 1019 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 BHLHA9Q7RTU4 235 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 DENND1CQ8IV53 801 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 TRIM59Q8IWR1 403 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 RBBP8NLQ8NC74 664 aaPredicted RBP14.6□□□□□ -0.07
USP4-206ENST00000461553 KCTD13Q8WZ19 329 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 KAT5Q92993 513 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 SMOC1Q9H4F8 434 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 CNGB3Q9NQW8 809 aa14.6□□□□□ -0.07
USP4-206ENST00000461553 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.6□□□□□ -0.07
USP4-206ENST00000461553 MUC22E2RYF6 1773 aaPredicted RBP14.6□□□□□ -0.07
USP4-206ENST00000461553 NYNRINQ9P2P1 1898 aaKnown RBP14.59□□□□□ -0.07
USP4-206ENST00000461553 TPRP12270 2363 aaKnown RBP14.59□□□□□ -0.07
USP4-206ENST00000461553 BCLAF3A2AJT9 711 aaKnown RBP14.59□□□□□ -0.07
USP4-206ENST00000461553 CAVIN2O95810 425 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 PENKP01210 267 aaPredicted RBP14.59□□□□□ -0.07
USP4-206ENST00000461553 KLKB1P03952 638 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 LCP1P13796 627 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 P2RY2P41231 377 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 WASP42768 502 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 HARS2P49590 506 aaKnown RBP14.59□□□□□ -0.07
USP4-206ENST00000461553 RGS7P49802 495 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 PKDCCQ504Y2 493 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 RRAGAQ7L523 313 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 LPCAT2Q7L5N7 544 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 ANKS1BQ7Z6G8 1248 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 FMNL3Q8IVF7 1028 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 ARHGEF19Q8IW93 802 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 SCML4Q8N228 414 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 CPXM2Q8N436 756 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 LMO3Q8TAP4 145 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 RLN3Q8WXF3 142 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 TFAP2BQ92481 460 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 DDX1Q92499 740 aaKnown RBP14.59□□□□□ -0.07
USP4-206ENST00000461553 NDRG1Q92597 394 aaKnown RBP14.59□□□□□ -0.07
USP4-206ENST00000461553 GOLGA1Q92805 767 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 EDEM2Q9BV94 578 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 SRRTQ9BXP5 876 aaKnown RBP14.59□□□□□ -0.07
USP4-206ENST00000461553 INTS2Q9H0H0 1204 aaKnown RBP14.59□□□□□ -0.07
USP4-206ENST00000461553 ABCC13Q9NSE7 274 aa14.59□□□□□ -0.07
USP4-206ENST00000461553 AGO1Q9UL18 857 aaKnown RBP14.59□□□□□ -0.07
USP4-206ENST00000461553 HBS1LQ9Y450 684 aaKnown RBP14.59□□□□□ -0.07
USP4-206ENST00000461553 ADAMTS9Q9P2N4 1935 aa14.58□□□□□ -0.07
USP4-206ENST00000461553 YJEFN3A6XGL0 299 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 PRRT4C9JH25 899 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 E7ENQ6 273 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 MAP3K13O43283 966 aa14.58□□□□□ -0.08
USP4-206ENST00000461553 KRT5P13647 590 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms