RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TRMT11Q7Z4G4 463 aaKnown RBP22.21■■□□□ 1.15
HMGB3-205ENST00000455596 ZNF513Q8N8E2 541 aaPredicted RBP22.21■■□□□ 1.15
HMGB3-205ENST00000455596 IRGQQ8WZA9 623 aa22.21■■□□□ 1.15
HMGB3-205ENST00000455596 EDEM1Q92611 657 aa22.21■■□□□ 1.15
HMGB3-205ENST00000455596 HSFY1Q96LI6 401 aa22.21■■□□□ 1.15
HMGB3-205ENST00000455596 PLXND1Q9Y4D7 1925 aa22.21■■□□□ 1.15
HMGB3-205ENST00000455596 CFAP54Q96N23 3096 aa22.21■■□□□ 1.15
HMGB3-205ENST00000455596 GTPBP10A4D1E9 387 aaKnown RBP22.2■■□□□ 1.14
HMGB3-205ENST00000455596 SGK1O00141 431 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 PIK3R2O00459 728 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 TRIM24O15164 1050 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 MED7O43513 233 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 ALDH1A2O94788 518 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 SLC9A1P19634 815 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 ERCC5P28715 1186 aaPredicted RBP22.2■■□□□ 1.14
HMGB3-205ENST00000455596 DGKGP49619 791 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 EXOC3L4Q17RC7 722 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 TMEM92Q6UXU6 159 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 RASSF3Q86WH2 238 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 DENND1CQ8IV53 801 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 FMNL3Q8IVF7 1028 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 BHMTQ93088 406 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 POLMQ9NP87 494 aaPredicted RBP22.2■■□□□ 1.14
HMGB3-205ENST00000455596 PLK2Q9NYY3 685 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 APEX2Q9UBZ4 518 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 SFMBT1Q9UHJ3 866 aa22.2■■□□□ 1.14
HMGB3-205ENST00000455596 AGO1Q9UL18 857 aaKnown RBP22.2■■□□□ 1.14
HMGB3-205ENST00000455596 HBS1LQ9Y450 684 aaKnown RBP22.2■■□□□ 1.14
HMGB3-205ENST00000455596 CEP192Q8TEP8 1941 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 NUP205Q92621 2012 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 GABBR2O75899 941 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 TGM1P22735 817 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 TRIP4Q15650 581 aaPredicted RBP22.19■■□□□ 1.14
HMGB3-205ENST00000455596 MAN2A1Q16706 1144 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 ANO7Q6IWH7 933 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 GJB7Q6PEY0 223 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 KBTBD6Q86V97 674 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 CPXM2Q8N436 756 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 GOLGA1Q92805 767 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 LOXL4Q96JB6 756 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 GBP4Q96PP9 640 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 PARD6AQ9NPB6 346 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 ZDHHC4Q9NPG8 344 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 STARD13Q9Y3M8 1113 aa22.19■■□□□ 1.14
HMGB3-205ENST00000455596 ZNF292O60281 2723 aa22.18■■□□□ 1.14
HMGB3-205ENST00000455596 FBXO21O94952 628 aa22.18■■□□□ 1.14
HMGB3-205ENST00000455596 CYBBP04839 570 aa22.18■■□□□ 1.14
HMGB3-205ENST00000455596 GNA15P30679 374 aa22.18■■□□□ 1.14
HMGB3-205ENST00000455596 GPD2P43304 727 aa22.18■■□□□ 1.14
HMGB3-205ENST00000455596 HARS2P49590 506 aaKnown RBP22.18■■□□□ 1.14
HMGB3-205ENST00000455596 LMNB2Q03252 620 aa22.18■■□□□ 1.14
HMGB3-205ENST00000455596 ARHGAP44Q17R89 818 aa22.18■■□□□ 1.14
HMGB3-205ENST00000455596 MDGA1Q8NFP4 955 aa22.18■■□□□ 1.14
HMGB3-205ENST00000455596 RMDN1Q96DB5 314 aa22.18■■□□□ 1.14
HMGB3-205ENST00000455596 ZC3H10Q96K80 434 aaKnown RBP22.18■■□□□ 1.14
HMGB3-205ENST00000455596 TPSD1Q9BZJ3 242 aa22.18■■□□□ 1.14
HMGB3-205ENST00000455596 GPR179Q6PRD1 2367 aa22.18■■□□□ 1.14
HMGB3-205ENST00000455596 THAP12O43422 761 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 ADAM23O75077 832 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 LETM1O95202 739 aaPredicted RBP22.17■■□□□ 1.14
HMGB3-205ENST00000455596 PENKP01210 267 aaPredicted RBP22.17■■□□□ 1.14
HMGB3-205ENST00000455596 LTFP02788 710 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 CISD3P0C7P0 127 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 HNRNPLP14866 589 aaKnown RBP eCLIP22.17■■□□□ 1.14
HMGB3-205ENST00000455596 PON1P27169 355 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 MEA1Q16626 185 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 USP39Q53GS9 565 aaKnown RBP22.17■■□□□ 1.14
HMGB3-205ENST00000455596 CT47A1Q5JQC4 288 aaPredicted RBP22.17■■□□□ 1.14
HMGB3-205ENST00000455596 FYB2Q5VWT5 728 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 MSANTD2Q6P1R3 559 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 TOGARAM2Q6ZUX3 1019 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 FAM217AQ8IXS0 508 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 CLEC4CQ8WTT0 213 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 ZNF606Q8WXB4 792 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 MIS12Q9H081 205 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 ST7Q9NRC1 585 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 SEMA4GQ9NTN9 838 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 FBXO10Q9UK96 956 aa22.17■■□□□ 1.14
HMGB3-205ENST00000455596 NTSR1P30989 418 aa22.16■■□□□ 1.14
HMGB3-205ENST00000455596 USP8P40818 1118 aa22.16■■□□□ 1.14
HMGB3-205ENST00000455596 ACADSBP45954 432 aa22.16■■□□□ 1.14
HMGB3-205ENST00000455596 RPL34P49207 117 aaKnown RBP22.16■■□□□ 1.14
HMGB3-205ENST00000455596 APBA1Q02410 837 aa22.16■■□□□ 1.14
HMGB3-205ENST00000455596 CSRP2Q16527 193 aa22.16■■□□□ 1.14
HMGB3-205ENST00000455596 PLK5Q496M5 336 aa22.16■■□□□ 1.14
HMGB3-205ENST00000455596 DENND1BQ6P3S1 775 aa22.16■■□□□ 1.14
HMGB3-205ENST00000455596 BECN2A8MW95 431 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 PRR5-ARHGAP8B1AHC4 643 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 PRRT4C9JH25 899 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 DCLK1O15075 740 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 SART1O43290 800 aaKnown RBP22.15■■□□□ 1.14
HMGB3-205ENST00000455596 MSI1O43347 362 aaKnown RBP22.15■■□□□ 1.14
HMGB3-205ENST00000455596 RHOBTB1O94844 696 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 EPN2O95208 641 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 PRKCSHP14314 528 aaPredicted RBP22.15■■□□□ 1.14
HMGB3-205ENST00000455596 GBP1P32455 592 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 ARHGAP8P85298 464 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 ELF2Q15723 593 aa22.15■■□□□ 1.14
HMGB3-205ENST00000455596 RSPO4Q2I0M5 234 aaPredicted RBP22.15■■□□□ 1.14
HMGB3-205ENST00000455596 VWA3BQ502W6 1294 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms