RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 MON1AQ86VX9 555 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 NIPA2Q8N8Q9 360 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 DQX1Q8TE96 717 aaKnown RBP11.46□□□□□ -0.57
SCN9A-205ENST00000454569 TCEAL4Q96EI5 215 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 SLC22A12Q96S37 553 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 SCUBE2Q9NQ36 999 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 PIGVQ9NUD9 493 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 MTPAPQ9NVV4 582 aaKnown RBP eCLIP11.46□□□□□ -0.57
SCN9A-205ENST00000454569 GPATCH2LQ9NWQ4 482 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 SMARCAL1Q9NZC9 954 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 DNMT3BQ9UBC3 853 aaKnown RBP11.46□□□□□ -0.57
SCN9A-205ENST00000454569 AMFRQ9UKV5 643 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 MAFFQ9ULX9 164 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 DOCK4Q8N1I0 1966 aa11.46□□□□□ -0.57
SCN9A-205ENST00000454569 C2orf78A6NCI8 922 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 M0QYT0 321 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 MOSPD3O75425 235 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 ENDOD1O94919 500 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 TRUB2O95900 331 aaKnown RBP11.45□□□□□ -0.58
SCN9A-205ENST00000454569 IGLV3-25P01717 112 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 LRG1P02750 347 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 CASQ1P31415 396 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 GJC1P36383 396 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 CYP4F8P98187 520 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 NME3Q13232 169 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 ZNF211Q13398 564 aaPredicted RBP11.45□□□□□ -0.58
SCN9A-205ENST00000454569 PIGHQ14442 188 aaPredicted RBP11.45□□□□□ -0.58
SCN9A-205ENST00000454569 LLGL1Q15334 1064 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 CA9Q16790 459 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 SLC5A9Q2M3M2 681 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 SMTNL2Q2TAL5 461 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 SLC25A52Q3SY17 297 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 KCNT1Q5JUK3 1230 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 STXBP5Q5T5C0 1151 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 CCDC149Q6ZUS6 474 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 CCDC185Q8N715 623 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 COG1Q8WTW3 980 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 WBP2Q969T9 261 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 TRMT2BQ96GJ1 504 aaKnown RBP11.45□□□□□ -0.58
SCN9A-205ENST00000454569 ALS2CR12Q96Q35 445 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 CYP2S1Q96SQ9 504 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 NAPGQ99747 312 aaPredicted RBP11.45□□□□□ -0.58
SCN9A-205ENST00000454569 HERPUD2Q9BSE4 406 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 APOL5Q9BWW9 433 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 RNF38Q9H0F5 515 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 ZWILCHQ9H900 591 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 WDR6Q9NNW5 1121 aaKnown RBP11.45□□□□□ -0.58
SCN9A-205ENST00000454569 ABCC13Q9NSE7 274 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 COMMD8Q9NX08 183 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 JRKLQ9Y4A0 524 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 UNC80Q8N2C7 3258 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 CCDC195A0A1B0GUA6 201 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 A0A1W2PPC1 479 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 CAPN9O14815 690 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 SPOPO43791 374 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 MAN1A1P33908 653 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 SSR1P43307 286 aaKnown RBP11.45□□□□□ -0.58
SCN9A-205ENST00000454569 ZXDBP98169 803 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 DLX2Q07687 328 aaPredicted RBP11.45□□□□□ -0.58
SCN9A-205ENST00000454569 ZC3H12AQ5D1E8 599 aaKnown RBP11.45□□□□□ -0.58
SCN9A-205ENST00000454569 PAPD7Q5XG87 772 aaKnown RBP11.45□□□□□ -0.58
SCN9A-205ENST00000454569 TXNDC8Q6A555 127 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 SCYL2Q6P3W7 929 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 MAMSTRQ6ZN01 415 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 FAM131BQ86XD5 332 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 KIF18AQ8NI77 898 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 MS4A14Q96JA4 679 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 CEP295NLQ96MC4 621 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 CORO1BQ9BR76 489 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 PLEKHA4Q9H4M7 779 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 PCDHA3Q9Y5H8 950 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 SNX10Q9Y5X0 201 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 MTCH2Q9Y6C9 303 aa11.45□□□□□ -0.58
SCN9A-205ENST00000454569 PI4K2BG5E9Z4 385 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 SART1O43290 800 aaKnown RBP11.44□□□□□ -0.58
SCN9A-205ENST00000454569 CD48P09326 243 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 RARAP10276 462 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 PYGMP11217 842 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 MYL4P12829 197 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 CTNNA2P26232 953 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 GABRR2P28476 465 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 CTNNA1P35221 906 aaKnown RBP11.44□□□□□ -0.58
SCN9A-205ENST00000454569 SLC1A1P43005 524 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 EFEMP1Q12805 493 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 VEPH1Q14D04 833 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 RPS6KA1Q15418 735 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 TAF12Q16514 161 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 SNX30Q5VWJ9 437 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 TMC5Q6UXY8 1006 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 GRASPQ7Z6J2 395 aaPredicted RBP11.44□□□□□ -0.58
SCN9A-205ENST00000454569 HOMEZQ8IX15 550 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 SYCE1Q8N0S2 351 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 PYROXD2Q8N2H3 581 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 RAPGEF5Q92565 580 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 PKNOX2Q96KN3 472 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 ZNF512Q96ME7 567 aaPredicted RBP11.44□□□□□ -0.58
SCN9A-205ENST00000454569 SLITRK1Q96PX8 696 aa11.44□□□□□ -0.58
SCN9A-205ENST00000454569 NSUN3Q9H649 340 aaKnown RBP11.44□□□□□ -0.58
SCN9A-205ENST00000454569 TLR8Q9NR97 1041 aaKnown RBP11.44□□□□□ -0.58
SCN9A-205ENST00000454569 DDIT4Q9NX09 232 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms