RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 ATXN3LQ9H3M9 355 aa15.25■□□□□ 0.03
TNF-208ENST00000449264 OLA1Q9NTK5 396 aaKnown RBP15.25■□□□□ 0.03
TNF-208ENST00000449264 PIGVQ9NUD9 493 aa15.25■□□□□ 0.03
TNF-208ENST00000449264 KLHL11Q9NVR0 708 aa15.25■□□□□ 0.03
TNF-208ENST00000449264 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.25■□□□□ 0.03
TNF-208ENST00000449264 LMCD1Q9NZU5 365 aa15.25■□□□□ 0.03
TNF-208ENST00000449264 DNMT3BQ9UBC3 853 aaKnown RBP15.25■□□□□ 0.03
TNF-208ENST00000449264 USP18Q9UMW8 372 aa15.25■□□□□ 0.03
TNF-208ENST00000449264 MTCH2Q9Y6C9 303 aa15.25■□□□□ 0.03
TNF-208ENST00000449264 PRPSAP2O60256 369 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 TUBB4AP04350 444 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 RHOP08100 348 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 IL1R2P27930 398 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 CDC25CP30307 473 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 CTNNA1P35221 906 aaKnown RBP15.24■□□□□ 0.03
TNF-208ENST00000449264 PCK1P35558 622 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 PPP3CCP48454 512 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 NTHL1P78549 312 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 SLC25A11Q02978 314 aaKnown RBP15.24■□□□□ 0.03
TNF-208ENST00000449264 HADHQ16836 314 aaKnown RBP15.24■□□□□ 0.03
TNF-208ENST00000449264 PABPC1LQ4VXU2 614 aaKnown RBP15.24■□□□□ 0.03
TNF-208ENST00000449264 TXNRD3NBQ6F5E7 133 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 MSANTD2Q6P1R3 559 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 SND1Q7KZF4 910 aaKnown RBP eCLIP15.24■□□□□ 0.03
TNF-208ENST00000449264 TADA2BQ86TJ2 420 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 RHOT1Q8IXI2 618 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 UBL4BQ8N7F7 174 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 KIF18AQ8NI77 898 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 MRPS31Q92665 395 aaKnown RBP15.24■□□□□ 0.03
TNF-208ENST00000449264 HES6Q96HZ4 224 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 SERPINB11Q96P15 392 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 PEBP4Q96S96 227 aa15.24■□□□□ 0.03
TNF-208ENST00000449264 CDK5RAP1Q96SZ6 601 aaKnown RBP15.24■□□□□ 0.03
TNF-208ENST00000449264 GAS2L1Q99501 681 aaPredicted RBP15.24■□□□□ 0.03
TNF-208ENST00000449264 CCDC66A2RUB6 948 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 MIF4GDA9UHW6 222 aaKnown RBP15.23■□□□□ 0.03
TNF-208ENST00000449264 NRG2O14511 850 aaPredicted RBP15.23■□□□□ 0.03
TNF-208ENST00000449264 KCNK3O14649 394 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 DDX3YO15523 660 aaKnown RBP15.23■□□□□ 0.03
TNF-208ENST00000449264 IRAK2O43187 625 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 PSTPIP1O43586 416 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 CXCR5P32302 372 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 GBP1P32455 592 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 CCR2P41597 374 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 KCNT1Q5JUK3 1230 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 SNX30Q5VWJ9 437 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 TXNDC8Q6A555 127 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 BNIPLQ7Z465 357 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 HSPH1Q92598 858 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 RNF34Q969K3 372 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 TCEAL4Q96EI5 215 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 MARCH2Q9P0N8 246 aa15.23■□□□□ 0.03
TNF-208ENST00000449264 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.23■□□□□ 0.03
TNF-208ENST00000449264 COCHO43405 550 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 IGLV3-25P01717 112 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 HMBSP08397 361 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 CTNNA2P26232 953 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 ATP5C1P36542 298 aaKnown RBP15.22■□□□□ 0.03
TNF-208ENST00000449264 TUBP50607 506 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 SLC5A9Q2M3M2 681 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 ATP13A4Q4VNC1 1196 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 STXBP5Q5T5C0 1151 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 CCDC185Q8N715 623 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 ALG3Q92685 438 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 PGAP3Q96FM1 320 aaPredicted RBP15.22■□□□□ 0.03
TNF-208ENST00000449264 NCAPGQ9BPX3 1015 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 WDR6Q9NNW5 1121 aaKnown RBP15.22■□□□□ 0.03
TNF-208ENST00000449264 GPATCH2LQ9NWQ4 482 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 CLDND1Q9NY35 253 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 DNMT3LQ9UJW3 386 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 EYSQ5T1H1 3165 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 SLC12A8A0AV02 714 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 ENDOD1O94919 500 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 FGF19O95750 216 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 F9P00740 461 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 OAS1P00973 400 aaKnown RBP15.22■□□□□ 0.03
TNF-208ENST00000449264 KRT1P04264 644 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 KRT7P08729 469 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 POU2F2P09086 479 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 EPHA5P54756 1037 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 ODF2Q5BJF6 829 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 ANKRD54Q6NXT1 300 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 MAB21L3Q8N8X9 362 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 LEMD2Q8NC56 503 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 SHKBP1Q8TBC3 707 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 SNRNP25Q9BV90 132 aaKnown RBP15.22■□□□□ 0.03
TNF-208ENST00000449264 SLITRK6Q9H5Y7 841 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 RRAGDQ9NQL2 400 aaPredicted RBP15.22■□□□□ 0.03
TNF-208ENST00000449264 TMPRSS4Q9NRS4 437 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 CDH22Q9UJ99 828 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 SNX12Q9UMY4 172 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 PCDHA3Q9Y5H8 950 aa15.22■□□□□ 0.03
TNF-208ENST00000449264 HELZP42694 1942 aaKnown RBP15.22■□□□□ 0.03
TNF-208ENST00000449264 SRGAP2O75044 1071 aa15.21■□□□□ 0.03
TNF-208ENST00000449264 TBX10O75333 385 aa15.21■□□□□ 0.03
TNF-208ENST00000449264 URI1O94763 535 aaPredicted RBP15.21■□□□□ 0.03
TNF-208ENST00000449264 MOCS2O96007 188 aaPredicted RBP15.21■□□□□ 0.03
TNF-208ENST00000449264 CKMP06732 381 aa15.21■□□□□ 0.03
TNF-208ENST00000449264 RARAP10276 462 aa15.21■□□□□ 0.03
TNF-208ENST00000449264 MBL2P11226 248 aaPredicted RBP15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms