RNA–Protein interactions for RNA: ENST00000439128.6

NEK1-201, Transcript of NIMA related kinase 1, humanhuman

TSL 1 (best) BASIC

Gene NEK1, Length 5,653 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1-201ENST00000439128 RPS6KL1Q9Y6S9 549 aa12.46□□□□□ -0.41
NEK1-201ENST00000439128 A0A0G2JLL6 359 aaPredicted RBP12.46□□□□□ -0.41
NEK1-201ENST00000439128 PPP1R3GB7ZBB8 358 aa12.46□□□□□ -0.41
NEK1-201ENST00000439128 NEDD8-MDP1E9PL57 170 aa12.46□□□□□ -0.41
NEK1-201ENST00000439128 RASSF9O75901 435 aa12.46□□□□□ -0.41
NEK1-201ENST00000439128 NFICP08651 508 aa12.46□□□□□ -0.41
NEK1-201ENST00000439128 LRRC14Q15048 493 aa12.46□□□□□ -0.41
NEK1-201ENST00000439128 PRR23BQ6ZRT6 265 aa12.46□□□□□ -0.41
NEK1-201ENST00000439128 PRRT2Q7Z6L0 340 aaPredicted RBP12.46□□□□□ -0.41
NEK1-201ENST00000439128 MAP2P11137 1827 aaKnown RBP12.46□□□□□ -0.41
NEK1-201ENST00000439128 C3P01024 1663 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 STMN1P16949 149 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 ITIH2P19823 946 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 HTR1BP28222 390 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 ARFIP2P53365 341 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 SMAD3P84022 425 aaKnown RBP12.46□□□□□ -0.42
NEK1-201ENST00000439128 TLE2Q04725 743 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 PTK7Q13308 1070 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 FAM83EQ2M2I3 478 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 CBWD3Q5JTY5 395 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 CBWD5Q5RIA9 395 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 FAM46CQ5VWP2 391 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 C3orf62Q6ZUJ4 267 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 ZDHHC17Q8IUH5 632 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 ELOA2Q8IYF1 753 aaPredicted RBP12.46□□□□□ -0.42
NEK1-201ENST00000439128 OSCP1Q8WVF1 389 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 MCRS1Q96EZ8 462 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 IARS2Q9NSE4 1012 aaKnown RBP12.46□□□□□ -0.42
NEK1-201ENST00000439128 SRRDQ9UH36 339 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 ZFP69BQ9UJL9 534 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 UBXN8O00124 270 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 AKAP3O75969 853 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 SNRPD1P62314 119 aaKnown RBP12.46□□□□□ -0.42
NEK1-201ENST00000439128 CHMP1BQ7LBR1 199 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 C11orf74Q86VG3 221 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 PPIL6Q8IXY8 311 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 MCOLN3Q8TDD5 553 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.46□□□□□ -0.42
NEK1-201ENST00000439128 RIC8BQ9NVN3 520 aa12.46□□□□□ -0.42
NEK1-201ENST00000439128 TBC1D3DA0A087WVF3 549 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 TBC1D3IA0A087WXS9 549 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 TBC1D3EA0A087X179 549 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 TBC1D3KA0A087X1G2 549 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 TBC1D3FA6NER0 549 aaPredicted RBP12.45□□□□□ -0.42
NEK1-201ENST00000439128 TBC1D3LB9A6J9 549 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 TBC1D3HP0C7X1 549 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 WASP42768 502 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 CNTN1Q12860 1018 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 CCL14Q16627 93 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 NFIL3Q16649 462 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 TBC1D3GQ6DHY5 549 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 TBC1D3CQ6IPX1 549 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 TBC1D3Q8IZP1 549 aaPredicted RBP12.45□□□□□ -0.42
NEK1-201ENST00000439128 PAWRQ96IZ0 340 aaKnown RBP12.45□□□□□ -0.42
NEK1-201ENST00000439128 ZNHIT2Q9UHR6 403 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 LMNAP02545 664 aaKnown RBP12.45□□□□□ -0.42
NEK1-201ENST00000439128 RAET1GQ6H3X3 334 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 CEP41Q9BYV8 373 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 ZFYVE1Q9HBF4 777 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 CDY1Q9Y6F8 540 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 RPN2P04844 631 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 SMPD1P17405 629 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 SOX11P35716 441 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 CASP8Q14790 479 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 SHROOM1Q2M3G4 852 aaPredicted RBP12.45□□□□□ -0.42
NEK1-201ENST00000439128 LBX2Q6XYB7 198 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 CXorf40BQ96DE9 158 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 MAGED4Q96JG8 741 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 TRABDQ9H4I3 376 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 VPS51Q9UID3 782 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 FRMPD4Q14CM0 1322 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 FKBP9O95302 570 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 STIP1P31948 543 aaKnown RBP12.45□□□□□ -0.42
NEK1-201ENST00000439128 CLNS1AP54105 237 aaKnown RBP12.45□□□□□ -0.42
NEK1-201ENST00000439128 SEC13P55735 322 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 PDE1CQ14123 709 aaPredicted RBP12.45□□□□□ -0.42
NEK1-201ENST00000439128 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.45□□□□□ -0.42
NEK1-201ENST00000439128 FKBP9P1Q75LS8 142 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 GLT6D1Q7Z4J2 308 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 BRI3BPQ8WY22 251 aa12.45□□□□□ -0.42
NEK1-201ENST00000439128 XAB2Q9HCS7 855 aaKnown RBP12.45□□□□□ -0.42
NEK1-201ENST00000439128 ZNF185O15231 689 aa12.44□□□□□ -0.42
NEK1-201ENST00000439128 OR56A5P0C7T3 313 aa12.44□□□□□ -0.42
NEK1-201ENST00000439128 YBX3P16989 372 aaKnown RBP eCLIP12.44□□□□□ -0.42
NEK1-201ENST00000439128 RRM1P23921 792 aa12.44□□□□□ -0.42
NEK1-201ENST00000439128 GUCA1AP43080 201 aaPredicted RBP12.44□□□□□ -0.42
NEK1-201ENST00000439128 HDAC4P56524 1084 aa12.44□□□□□ -0.42
NEK1-201ENST00000439128 DUSP4Q13115 394 aa12.44□□□□□ -0.42
NEK1-201ENST00000439128 CAPSQ13938 189 aa12.44□□□□□ -0.42
NEK1-201ENST00000439128 MAP4K3Q8IVH8 894 aa12.44□□□□□ -0.42
NEK1-201ENST00000439128 PIP4K2CQ8TBX8 421 aa12.44□□□□□ -0.42
NEK1-201ENST00000439128 ANKS1AQ92625 1134 aa12.44□□□□□ -0.42
NEK1-201ENST00000439128 PKNOX2Q96KN3 472 aa12.44□□□□□ -0.42
NEK1-201ENST00000439128 TGS1Q96RS0 853 aaKnown RBP12.44□□□□□ -0.42
NEK1-201ENST00000439128 OR6C75A6NL08 312 aa12.44□□□□□ -0.42
NEK1-201ENST00000439128 GCKP35557 465 aa12.44□□□□□ -0.42
NEK1-201ENST00000439128 KCNJ1P48048 391 aa12.44□□□□□ -0.42
NEK1-201ENST00000439128 TOB1P50616 345 aaPredicted RBP12.44□□□□□ -0.42
NEK1-201ENST00000439128 ZNF280AP59817 542 aaPredicted RBP12.44□□□□□ -0.42
NEK1-201ENST00000439128 PDCD2Q16342 344 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms