RNA–Protein interactions for RNA: ENST00000424804.6

VRK3-203, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,061 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-203ENST00000424804 SPDYCQ5MJ68 293 aa13.65□□□□□ -0.22
VRK3-203ENST00000424804 PPP1R26Q5T8A7 1209 aaPredicted RBP13.65□□□□□ -0.22
VRK3-203ENST00000424804 TTI2Q6NXR4 508 aa13.65□□□□□ -0.22
VRK3-203ENST00000424804 ZNF513Q8N8E2 541 aaPredicted RBP13.65□□□□□ -0.22
VRK3-203ENST00000424804 TRIML1Q8N9V2 468 aa13.65□□□□□ -0.22
VRK3-203ENST00000424804 FBXL13Q8NEE6 735 aa13.65□□□□□ -0.22
VRK3-203ENST00000424804 SRRTQ9BXP5 876 aaKnown RBP13.65□□□□□ -0.22
VRK3-203ENST00000424804 CD93Q9NPY3 652 aa13.65□□□□□ -0.22
VRK3-203ENST00000424804 PILRBQ9UKJ0 227 aa13.65□□□□□ -0.22
VRK3-203ENST00000424804 IGF2RP11717 2491 aa13.65□□□□□ -0.22
VRK3-203ENST00000424804 SPEGQ15772 3267 aa13.65□□□□□ -0.23
VRK3-203ENST00000424804 IGHV1OR15-9A0A0B4J2B8 117 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 STC2O76061 302 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 RARGP13631 454 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 TYRP14679 529 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 TRIM21P19474 475 aaKnown RBP13.64□□□□□ -0.23
VRK3-203ENST00000424804 CSRP1P21291 193 aaKnown RBP13.64□□□□□ -0.23
VRK3-203ENST00000424804 ITPKAP23677 461 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 NTSR1P30989 418 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 GTF2H1P32780 548 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 NOVA1P51513 510 aaKnown RBP13.64□□□□□ -0.23
VRK3-203ENST00000424804 CBWD6Q4V339 395 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 CBWD3Q5JTY5 395 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 CBWD5Q5RIA9 395 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 C10orf76Q5T2E6 689 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 SH3PXD2AQ5TCZ1 1133 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 BTBD8Q5XKL5 378 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 SLC23A3Q6PIS1 610 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 ARMCX6Q7L4S7 300 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 LPCAT2Q7L5N7 544 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 BHLHA9Q7RTU4 235 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 CCDC186Q7Z3E2 898 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 SYT12Q8IV01 421 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 SLC41A1Q8IVJ1 513 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 CEP63Q96MT8 703 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 GABRG3Q99928 467 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 NT5C1AQ9BXI3 368 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 DUSP16Q9BY84 665 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 NIF3L1Q9GZT8 377 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 METTL14Q9HCE5 456 aaKnown RBP13.64□□□□□ -0.23
VRK3-203ENST00000424804 TMEM9BQ9NQ34 198 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 RAB20Q9NX57 234 aa13.64□□□□□ -0.23
VRK3-203ENST00000424804 WASH3PC4AMC7 463 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 NEDD8-MDP1E9PL57 170 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 NDUFV2P19404 249 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 PLA2G4AP47712 749 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 ZNF394Q53GI3 561 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 TRIM61Q5EBN2 209 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 RAB41Q5JT25 222 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 GRAMD4Q6IC98 578 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 TPGS1Q6ZTW0 290 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 PIP4P1Q86T03 277 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 ZC3H3Q8IXZ2 948 aaKnown RBP13.63□□□□□ -0.23
VRK3-203ENST00000424804 DEFB119Q8N690 84 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 SLC4A11Q8NBS3 891 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 RBBP8NLQ8NC74 664 aaPredicted RBP13.63□□□□□ -0.23
VRK3-203ENST00000424804 IPO4Q8TEX9 1081 aaKnown RBP13.63□□□□□ -0.23
VRK3-203ENST00000424804 TATDN2Q93075 761 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 JAKMIP2Q96AA8 810 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 BBS2Q9BXC9 721 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 SLC6A17Q9H1V8 727 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 CAPN10Q9HC96 672 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 FSCN3Q9NQT6 498 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 DNAJC17Q9NVM6 304 aaKnown RBP13.63□□□□□ -0.23
VRK3-203ENST00000424804 CALCOCO1Q9P1Z2 691 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 WDR35Q9P2L0 1181 aa13.63□□□□□ -0.23
VRK3-203ENST00000424804 FGFR1OPO95684 399 aaKnown RBP13.62□□□□□ -0.23
VRK3-203ENST00000424804 PENKP01210 267 aaPredicted RBP13.62□□□□□ -0.23
VRK3-203ENST00000424804 CEACAM1P13688 526 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 HOXB2P14652 356 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 ENGP17813 658 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 RAD23BP54727 409 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 ENPP2Q13822 863 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 DAB2IPQ5VWQ8 1189 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 FYB2Q5VWT5 728 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 CLEC17AQ6ZS10 378 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 SLC35C1Q96A29 364 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 ERLEC1Q96DZ1 483 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 ARID3AQ99856 593 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 UBXN6Q9BZV1 441 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 PLK2Q9NYY3 685 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 CLIC5Q9NZA1 410 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 BCCIPQ9P287 314 aaKnown RBP eCLIP13.62□□□□□ -0.23
VRK3-203ENST00000424804 DNMT3LQ9UJW3 386 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 CLEC4EQ9ULY5 219 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 RAD54BQ9Y620 910 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 CKAP5Q14008 2032 aa13.62□□□□□ -0.23
VRK3-203ENST00000424804 ATXN2Q99700 1313 aaKnown RBP13.62□□□□□ -0.23
VRK3-203ENST00000424804 TULP2O00295 520 aa13.61□□□□□ -0.23
VRK3-203ENST00000424804 MAP3K13O43283 966 aa13.61□□□□□ -0.23
VRK3-203ENST00000424804 SPINK2P20155 84 aa13.61□□□□□ -0.23
VRK3-203ENST00000424804 FMO5P49326 533 aa13.61□□□□□ -0.23
VRK3-203ENST00000424804 ZNF252P-AS1Q0IIN9 211 aa13.61□□□□□ -0.23
VRK3-203ENST00000424804 SEMA3BQ13214 749 aa13.61□□□□□ -0.23
VRK3-203ENST00000424804 BYSLQ13895 437 aaKnown RBP13.61□□□□□ -0.23
VRK3-203ENST00000424804 PREPLQ4J6C6 727 aaPredicted RBP13.61□□□□□ -0.23
VRK3-203ENST00000424804 C10orf120Q5SQS8 335 aa13.61□□□□□ -0.23
VRK3-203ENST00000424804 LYSMD4Q5XG99 296 aa13.61□□□□□ -0.23
VRK3-203ENST00000424804 TRMT11Q7Z4G4 463 aaKnown RBP13.61□□□□□ -0.23
VRK3-203ENST00000424804 PGBD3Q8N328 593 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms