RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 RAB6CQ53S08 254 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 C10orf120Q5SQS8 335 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 DAB2IPQ5VWQ8 1189 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 ANKRD54Q6NXT1 300 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 SND1Q7KZF4 910 aaKnown RBP eCLIP14.84□□□□□ -0.032e-6■□□□□ 10
SF3B1-204ENST00000414963 KATNAL2Q8IYT4 538 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 TEKT4Q8WW24 435 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 MRPS31Q92665 395 aaKnown RBP14.84□□□□□ -0.03
SF3B1-204ENST00000414963 KRT35Q92764 455 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 NTAN1Q96AB6 310 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 SLC39A13Q96H72 371 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 SERPINB11Q96P15 392 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 RAB6CQ9H0N0 254 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 IGFLR1Q9H665 355 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 CCSER2Q9H7U1 834 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 FAM204AQ9H8W3 233 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 PIGVQ9NUD9 493 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 HCFC1R1Q9NWW0 138 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 MARCH2Q9P0N8 246 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 ZMYM5Q9UJ78 669 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 SNX12Q9UMY4 172 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 TLR6Q9Y2C9 796 aa14.84□□□□□ -0.03
SF3B1-204ENST00000414963 HBS1LQ9Y450 684 aaKnown RBP14.84□□□□□ -0.03
SF3B1-204ENST00000414963 CES2O00748 559 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 ZNF197O14709 1029 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 COCHO43405 550 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 PRPSAP2O60256 369 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 MOSPD3O75425 235 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 TBX18O95935 607 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 IGLV3-27P01718 113 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 RHOP08100 348 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 SLC2A3P11169 496 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 DDX6P26196 483 aaKnown RBP eCLIP14.83□□□□□ -0.04
SF3B1-204ENST00000414963 CCR2P41597 374 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 RWDD2BP57060 319 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 AMPD2Q01433 879 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 RING1Q06587 406 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 SCAPQ12770 1279 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 NME3Q13232 169 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 PPP2R5DQ14738 602 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 TRIP4Q15650 581 aaPredicted RBP14.83□□□□□ -0.04
SF3B1-204ENST00000414963 PRSS36Q5K4E3 855 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 BRMS1LQ5PSV4 323 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 PDZD4Q76G19 769 aaPredicted RBP14.83□□□□□ -0.04
SF3B1-204ENST00000414963 GPR149Q86SP6 731 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 ADAM32Q8TC27 787 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 SMG7Q92540 1137 aaKnown RBP14.83□□□□□ -0.04
SF3B1-204ENST00000414963 ALG3Q92685 438 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 LRCH3Q96II8 777 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 GCNAQ96QF7 691 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 PEBP4Q96S96 227 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 CARD9Q9H257 536 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 DDX56Q9NY93 547 aaKnown RBP14.83□□□□□ -0.04
SF3B1-204ENST00000414963 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.83□□□□□ -0.04
SF3B1-204ENST00000414963 NUDT5Q9UKK9 219 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 PACSIN2Q9UNF0 486 aaPredicted RBP14.83□□□□□ -0.04
SF3B1-204ENST00000414963 ZNF638Q14966 1978 aaKnown RBP14.83□□□□□ -0.04
SF3B1-204ENST00000414963 CLUHO75153 1309 aa14.83□□□□□ -0.04
SF3B1-204ENST00000414963 C2orf78A6NCI8 922 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 KCNU1A8MYU2 1149 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 MDM4O15151 490 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 LINC01565O15544 149 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 RARAP10276 462 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 MYL4P12829 197 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 TCP1P17987 556 aaKnown RBP14.82□□□□□ -0.04
SF3B1-204ENST00000414963 ADRA1BP35368 520 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 SSR1P43307 286 aaKnown RBP14.82□□□□□ -0.04
SF3B1-204ENST00000414963 MARCKSL1P49006 195 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 ATXN1P54253 815 aaKnown RBP14.82□□□□□ -0.04
SF3B1-204ENST00000414963 EFEMP1Q12805 493 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 MTA1Q13330 715 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 TUBB2AQ13885 445 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 ERMARDQ5T6L9 678 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 TXNRD3NBQ6F5E7 133 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 SCYL2Q6P3W7 929 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 SYCE2Q6PIF2 218 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 GRASPQ7Z6J2 395 aaPredicted RBP14.82□□□□□ -0.04
SF3B1-204ENST00000414963 RCOR2Q8IZ40 523 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 C12orf76Q8N812 135 aaPredicted RBP14.82□□□□□ -0.04
SF3B1-204ENST00000414963 EXD1Q8NHP7 514 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 SHKBP1Q8TBC3 707 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 FAM71BQ8TC56 605 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 PBKQ96KB5 322 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 OSBPL9Q96SU4 736 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 TUBB2BQ9BVA1 445 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 RNF38Q9H0F5 515 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 ATXN3LQ9H3M9 355 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 WDCPQ9H6R7 721 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.82□□□□□ -0.04
SF3B1-204ENST00000414963 ARHGEF38Q9NXL2 777 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 PCSK1NQ9UHG2 260 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 SFMBT1Q9UHJ3 866 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 SAR1BQ9Y6B6 198 aa14.82□□□□□ -0.04
SF3B1-204ENST00000414963 A0A1W2PRU2 124 aa14.81□□□□□ -0.04
SF3B1-204ENST00000414963 SPDYE4A6NLX3 237 aa14.81□□□□□ -0.04
SF3B1-204ENST00000414963 NRG2O14511 850 aaPredicted RBP14.81□□□□□ -0.04
SF3B1-204ENST00000414963 HDCP19113 662 aa14.81□□□□□ -0.04
SF3B1-204ENST00000414963 WEE1P30291 646 aa14.81□□□□□ -0.04
SF3B1-204ENST00000414963 CCR1P32246 355 aa14.81□□□□□ -0.04
SF3B1-204ENST00000414963 ARSEP51690 589 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms