RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 C7orf25Q9BPX7 421 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 EFR3BQ9Y2G0 817 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 ETFBP38117 255 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 ITGA8P53708 1063 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 DEFB107AQ8IZN7 70 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 RRN3Q9NYV6 651 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 CLOCKO15516 846 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 RBM43Q6ZSC3 357 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 MYOM2P54296 1465 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 WRBO00258 174 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 GAS2O43903 313 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 CCNCP24863 283 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 CCR4P51679 360 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 CHN2P52757 468 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 IST1P53990 364 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 DGCR6Q14129 220 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 FAM20CQ8IXL6 584 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 APBB2Q92870 758 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 SLC38A2Q96QD8 506 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 TBCDQ9BTW9 1192 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 CLEC4AQ9UMR7 237 aa13.68□□□□□ -0.22
CCDC88A-204ENST00000413716 P4HBP07237 508 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 PDPK2PQ6A1A2 396 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 PPP1R18Q6NYC8 613 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 MTSS1LQ765P7 747 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 DHFR2Q86XF0 187 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 CPA5Q8WXQ8 436 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 CNKSR1Q969H4 720 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 GPRC5DQ9NZD1 345 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 NCKIPSDQ9NZQ3 722 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 SERPINA3P01011 423 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 ADHFE1Q8IWW8 467 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 STARD8Q92502 1023 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 ZNF669Q96BR6 464 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 SPATA33Q96N06 139 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 ZNF184Q99676 751 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 KRT33AO76009 404 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 NFIAQ12857 509 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 ARID5BQ14865 1188 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 TCHHL1Q5QJ38 904 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 OR2L5Q8NG80 312 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 EDC3Q96F86 508 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 TRMT13Q9NUP7 481 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 VPS4BO75351 444 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 RLN1P04808 185 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 TNFAIP8L3Q5GJ75 292 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 ZMYM1Q5SVZ6 1142 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 ANKRD26P1Q6NSI1 321 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 SPAG16Q8N0X2 631 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 EPB41L1Q9H4G0 881 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 A0A1W2PQC6 194 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 TADA2AO75478 443 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 CIAO1O76071 339 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 ZNF37AP17032 561 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 KCNJ6P48051 423 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 TOP3AQ13472 1001 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 TYSND1Q2T9J0 566 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 CCDC24Q8N4L8 307 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 C17orf50Q8WW18 174 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 RNASEH1O60930 286 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 ALOX5P09917 674 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 IL12AP29459 219 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 PDCD4Q53EL6 469 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 NUDT12Q9BQG2 462 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 LXNQ9BS40 222 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 NFKBIZQ9BYH8 718 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 APEX2Q9UBZ4 518 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 CLRN2A0PK11 232 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 EFNA5P52803 228 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 ZFP69Q49AA0 526 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 RIPOR1Q6ZS17 1223 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 DNAJC1Q96KC8 554 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 ADGRG1Q9Y653 693 aa13.67□□□□□ -0.22
CCDC88A-204ENST00000413716 MAGEB3O15480 346 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 EMILIN2Q9BXX0 1053 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 POTEMA6NI47 508 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 NT5C2P49902 561 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 AGMOQ6ZNB7 445 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 C8orf59Q8N0T1 100 aaPredicted RBP13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 FAM71DQ8N9W8 422 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 GRIP2Q9C0E4 1043 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 CST11Q9H112 138 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 NINQ8N4C6 2090 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 UHRF1BP1LA0JNW5 1464 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 SLC15A2Q16348 729 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 TRAPPC11Q7Z392 1133 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 PRH1P02810 166 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 AQP5P55064 265 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 TUBA3EQ6PEY2 450 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 LENG1Q96BZ8 264 aaPredicted RBP13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 KATNAL1Q9BW62 490 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 VPS51Q9UID3 782 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 SLC2A3P11169 496 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 COPZ1P61923 177 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 ZNF655Q8N720 491 aaPredicted RBP13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 AAR2Q9Y312 384 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 ATP6V1G2O95670 118 aa13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 UBA1P22314 1058 aaKnown RBP13.66□□□□□ -0.22
CCDC88A-204ENST00000413716 MTDHQ86UE4 582 aaKnown RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms