RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 CTC1Q2NKJ3 1217 aa18.83■□□□□ 0.6
SDC1-203ENST00000403076 GPR158Q5T848 1215 aa18.83■□□□□ 0.6
SDC1-203ENST00000403076 SLFN11Q7Z7L1 901 aa18.83■□□□□ 0.6
SDC1-203ENST00000403076 MAB21L3Q8N8X9 362 aa18.83■□□□□ 0.6
SDC1-203ENST00000403076 CENPIQ92674 756 aaPredicted RBP18.83■□□□□ 0.6
SDC1-203ENST00000403076 SLITRK6Q9H5Y7 841 aa18.83■□□□□ 0.6
SDC1-203ENST00000403076 PCSK1NQ9UHG2 260 aa18.83■□□□□ 0.6
SDC1-203ENST00000403076 TRANK1O15050 2925 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 SLC12A8A0AV02 714 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 MSI1O43347 362 aaKnown RBP18.82■□□□□ 0.6
SDC1-203ENST00000403076 PRPSAP2O60256 369 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 TBX10O75333 385 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 LRCH4O75427 683 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 HDCP19113 662 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 RDXP35241 583 aaKnown RBP18.82■□□□□ 0.6
SDC1-203ENST00000403076 ITIH3Q06033 890 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 DLX2Q07687 328 aaPredicted RBP18.82■□□□□ 0.6
SDC1-203ENST00000403076 SKIV2LQ15477 1246 aaKnown RBP18.82■□□□□ 0.6
SDC1-203ENST00000403076 TEAD2Q15562 447 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 SLC5A9Q2M3M2 681 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 RAB6CQ53S08 254 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 ATAT1Q5SQI0 421 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 ZFYVE27Q5T4F4 411 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 PPM1EQ8WY54 764 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 CYP2S1Q96SQ9 504 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 RAB6CQ9H0N0 254 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 ADAM7Q9H2U9 754 aa18.82■□□□□ 0.6
SDC1-203ENST00000403076 TRAV19A0A0A6YYK7 116 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 ENDOD1O94919 500 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 PAPLNO95428 1278 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 OAS1P00973 400 aaKnown RBP18.81■□□□□ 0.6
SDC1-203ENST00000403076 MBL2P11226 248 aaPredicted RBP18.81■□□□□ 0.6
SDC1-203ENST00000403076 DDX6P26196 483 aaKnown RBP eCLIP18.81■□□□□ 0.69e-7■■■■□ 20.2
SDC1-203ENST00000403076 MIPP30301 263 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 PCK1P35558 622 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 DNA2P51530 1060 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 ATXN1P54253 815 aaKnown RBP18.81■□□□□ 0.6
SDC1-203ENST00000403076 HDAC4P56524 1084 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 TBX4P57082 545 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 ETF1P62495 437 aaKnown RBP18.81■□□□□ 0.6
SDC1-203ENST00000403076 OTUD1Q5VV17 481 aaPredicted RBP18.81■□□□□ 0.6
SDC1-203ENST00000403076 KLHDC10Q6PID8 442 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 NYAP1Q6ZVC0 841 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 NT5DC3Q86UY8 548 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 FAM131BQ86XD5 332 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 ARFGAP1Q8N6T3 406 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 ARL14EPQ8N8R7 260 aaPredicted RBP18.81■□□□□ 0.6
SDC1-203ENST00000403076 ING5Q8WYH8 240 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 PGAP3Q96FM1 320 aaPredicted RBP18.81■□□□□ 0.6
SDC1-203ENST00000403076 ADAM33Q9BZ11 813 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 ZWILCHQ9H900 591 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 PIGVQ9NUD9 493 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 JRKLQ9Y4A0 524 aa18.81■□□□□ 0.6
SDC1-203ENST00000403076 KIF2AO00139 706 aaPredicted RBP18.8■□□□□ 0.6
SDC1-203ENST00000403076 IRAK2O43187 625 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 CKMP06732 381 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 HMBSP08397 361 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 FSHRP23945 695 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 KPNA1P52294 538 aaPredicted RBP18.8■□□□□ 0.6
SDC1-203ENST00000403076 TAS2R40P59535 323 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 RPS6KA1Q15418 735 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 PRSS36Q5K4E3 855 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 STXBP5Q5T5C0 1151 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 SYT10Q6XYQ8 523 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 RHOT1Q8IXI2 618 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 RIPOR3Q96MK2 946 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 WDR24Q96S15 920 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 RNF38Q9H0F5 515 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 TASP1Q9H6P5 420 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 TMEM51Q9NW97 253 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 CALCOCO1Q9P1Z2 691 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 DNAI1Q9UI46 699 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 USP18Q9UMW8 372 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 PACSIN2Q9UNF0 486 aaPredicted RBP18.8■□□□□ 0.6
SDC1-203ENST00000403076 SBDSQ9Y3A5 250 aaKnown RBP eCLIP18.8■□□□□ 0.6
SDC1-203ENST00000403076 DOCK6Q96HP0 2047 aa18.8■□□□□ 0.6
SDC1-203ENST00000403076 ZNF500O60304 480 aaPredicted RBP18.79■□□□□ 0.6
SDC1-203ENST00000403076 MOSPD3O75425 235 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 IGLV3-25P01717 112 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 TCF4P15884 667 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 CASQ1P31415 396 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 LTBRP36941 435 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 COG7P83436 770 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 TRIP4Q15650 581 aaPredicted RBP18.79■□□□□ 0.6
SDC1-203ENST00000403076 CLUL1Q15846 466 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 ARL13BQ3SXY8 428 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 ZC3H12AQ5D1E8 599 aaKnown RBP18.79■□□□□ 0.6
SDC1-203ENST00000403076 MEI1Q5TIA1 1274 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 UBL4BQ8N7F7 174 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 ITFG1Q8TB96 612 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 GUCD1Q96NT3 240 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 SLC46A2Q9BY10 475 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 WDCPQ9H6R7 721 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 SMPD4Q9NXE4 827 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 CDH22Q9UJ99 828 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 TLR6Q9Y2C9 796 aa18.79■□□□□ 0.6
SDC1-203ENST00000403076 HBS1LQ9Y450 684 aaKnown RBP18.79■□□□□ 0.6
SDC1-203ENST00000403076 MIF4GDA9UHW6 222 aaKnown RBP18.79■□□□□ 0.6
SDC1-203ENST00000403076 NRG2O14511 850 aaPredicted RBP18.79■□□□□ 0.6
SDC1-203ENST00000403076 ENC1O14682 589 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms