RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 WDR35Q9P2L0 1181 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 SCML2Q9UQR0 700 aa30.01■■■□□ 2.39
HMGB1-205ENST00000399494 GON4LQ3T8J9 2241 aa30■■■□□ 2.39
HMGB1-205ENST00000399494 ASCC3Q8N3C0 2202 aaKnown RBP30■■■□□ 2.39
HMGB1-205ENST00000399494 CACNG3O60359 315 aa30■■■□□ 2.39
HMGB1-205ENST00000399494 GTF2H1P32780 548 aa30■■■□□ 2.39
HMGB1-205ENST00000399494 ASPAP45381 313 aa30■■■□□ 2.39
HMGB1-205ENST00000399494 RPL6Q02878 288 aaKnown RBP30■■■□□ 2.39
HMGB1-205ENST00000399494 KRT39Q6A163 491 aa30■■■□□ 2.39
HMGB1-205ENST00000399494 CLEC20AQ6ZU45 233 aa30■■■□□ 2.39
HMGB1-205ENST00000399494 MLKLQ8NB16 471 aa30■■■□□ 2.39
HMGB1-205ENST00000399494 CCDC150Q8NCX0 1101 aa30■■■□□ 2.39
HMGB1-205ENST00000399494 XPO6Q96QU8 1125 aaKnown RBP30■■■□□ 2.39
HMGB1-205ENST00000399494 HNRNPABQ99729 332 aaKnown RBP30■■■□□ 2.39
HMGB1-205ENST00000399494 BBS2Q9BXC9 721 aa30■■■□□ 2.39
HMGB1-205ENST00000399494 METTL14Q9HCE5 456 aaKnown RBP30■■■□□ 2.39
HMGB1-205ENST00000399494 MARK1Q9P0L2 795 aa30■■■□□ 2.39
HMGB1-205ENST00000399494 SLC6A14Q9UN76 642 aa30■■■□□ 2.39
HMGB1-205ENST00000399494 PRRT4C9JH25 899 aa29.99■■■□□ 2.39
HMGB1-205ENST00000399494 NEDD8-MDP1E9PL57 170 aa29.99■■■□□ 2.39
HMGB1-205ENST00000399494 TYRP14679 529 aa29.99■■■□□ 2.39
HMGB1-205ENST00000399494 ADORA2BP29275 332 aa29.99■■■□□ 2.39
HMGB1-205ENST00000399494 MXI1P50539 228 aa29.99■■■□□ 2.39
HMGB1-205ENST00000399494 DUOXA1Q1HG43 343 aa29.99■■■□□ 2.39
HMGB1-205ENST00000399494 TPGS1Q6ZTW0 290 aa29.99■■■□□ 2.39
HMGB1-205ENST00000399494 PIP4P1Q86T03 277 aa29.99■■■□□ 2.39
HMGB1-205ENST00000399494 KDF1Q8NAX2 398 aaPredicted RBP29.99■■■□□ 2.39
HMGB1-205ENST00000399494 CEP76Q8TAP6 659 aa29.99■■■□□ 2.39
HMGB1-205ENST00000399494 TWNKQ96RR1 684 aa29.99■■■□□ 2.39
HMGB1-205ENST00000399494 SCNM1Q9BWG6 230 aa29.99■■■□□ 2.39
HMGB1-205ENST00000399494 UPK3BL1B0FP48 263 aa29.98■■■□□ 2.39
HMGB1-205ENST00000399494 UPK3BL2E5RIL1 263 aa29.98■■■□□ 2.39
HMGB1-205ENST00000399494 CFIP05156 583 aa29.98■■■□□ 2.39
HMGB1-205ENST00000399494 FAM200BP0CF97 657 aa29.98■■■□□ 2.39
HMGB1-205ENST00000399494 SEMA3BQ13214 749 aa29.98■■■□□ 2.39
HMGB1-205ENST00000399494 IPO4Q8TEX9 1081 aaKnown RBP29.98■■■□□ 2.39
HMGB1-205ENST00000399494 CYFIP2Q96F07 1278 aa29.98■■■□□ 2.39
HMGB1-205ENST00000399494 ADAM33Q9BZ11 813 aa29.98■■■□□ 2.39
HMGB1-205ENST00000399494 SLC32A1Q9H598 525 aa29.98■■■□□ 2.39
HMGB1-205ENST00000399494 NMUR1Q9HB89 426 aa29.98■■■□□ 2.39
HMGB1-205ENST00000399494 FSCN3Q9NQT6 498 aa29.98■■■□□ 2.39
HMGB1-205ENST00000399494 RWDD2AQ9UIY3 292 aa29.98■■■□□ 2.39
HMGB1-205ENST00000399494 LSM7Q9UK45 103 aaKnown RBP29.98■■■□□ 2.39
HMGB1-205ENST00000399494 ZMIZ1Q9ULJ6 1067 aa29.98■■■□□ 2.39
HMGB1-205ENST00000399494 PI4KAP42356 2102 aa29.98■■■□□ 2.39
HMGB1-205ENST00000399494 IGHV1OR15-9A0A0B4J2B8 117 aa29.97■■■□□ 2.39
HMGB1-205ENST00000399494 CYP26A1O43174 497 aa29.97■■■□□ 2.39
HMGB1-205ENST00000399494 FGFR1OPO95684 399 aaKnown RBP29.97■■■□□ 2.39
HMGB1-205ENST00000399494 SERPINF2P08697 491 aa29.97■■■□□ 2.39
HMGB1-205ENST00000399494 CISD3P0C7P0 127 aa29.97■■■□□ 2.39
HMGB1-205ENST00000399494 ACO1P21399 889 aaKnown RBP29.97■■■□□ 2.39
HMGB1-205ENST00000399494 ZNF33AQ06730 810 aa29.97■■■□□ 2.39
HMGB1-205ENST00000399494 SDE2Q6IQ49 451 aa29.97■■■□□ 2.39
HMGB1-205ENST00000399494 KIAA1211LQ6NV74 962 aa29.97■■■□□ 2.39
HMGB1-205ENST00000399494 TOGARAM2Q6ZUX3 1019 aa29.97■■■□□ 2.39
HMGB1-205ENST00000399494 CHPFQ8IZ52 775 aa29.97■■■□□ 2.39
HMGB1-205ENST00000399494 TAS1R2Q8TE23 839 aa29.97■■■□□ 2.39
HMGB1-205ENST00000399494 GABRG3Q99928 467 aa29.97■■■□□ 2.39
HMGB1-205ENST00000399494 CAPN10Q9HC96 672 aa29.97■■■□□ 2.39
HMGB1-205ENST00000399494 UTP3Q9NQZ2 479 aaKnown RBP eCLIP29.97■■■□□ 2.399e-13■■■■■ 192.3
HMGB1-205ENST00000399494 MTPAPQ9NVV4 582 aaKnown RBP eCLIP29.97■■■□□ 2.394e-6■□□□□ 9.4
HMGB1-205ENST00000399494 DACH1Q9UI36 760 aa29.97■■■□□ 2.39
HMGB1-205ENST00000399494 ZNF217O75362 1048 aa29.96■■■□□ 2.39
HMGB1-205ENST00000399494 NDUFV2P19404 249 aa29.96■■■□□ 2.39
HMGB1-205ENST00000399494 PLA2G4AP47712 749 aa29.96■■■□□ 2.39
HMGB1-205ENST00000399494 MCCD1P59942 119 aaPredicted RBP29.96■■■□□ 2.39
HMGB1-205ENST00000399494 GOLGA8FQ08AF8 430 aa29.96■■■□□ 2.39
HMGB1-205ENST00000399494 GOLGA8DPQ0D2H9 430 aa29.96■■■□□ 2.39
HMGB1-205ENST00000399494 INCA1Q0VD86 236 aa29.96■■■□□ 2.39
HMGB1-205ENST00000399494 KLHDC10Q6PID8 442 aa29.96■■■□□ 2.39
HMGB1-205ENST00000399494 SLC41A1Q8IVJ1 513 aa29.96■■■□□ 2.39
HMGB1-205ENST00000399494 SRRTQ9BXP5 876 aaKnown RBP29.96■■■□□ 2.39
HMGB1-205ENST00000399494 NUDT5Q9UKK9 219 aa29.96■■■□□ 2.39
HMGB1-205ENST00000399494 CEP192Q8TEP8 1941 aa29.96■■■□□ 2.39
HMGB1-205ENST00000399494 MYH10P35580 1976 aa29.95■■■□□ 2.39
HMGB1-205ENST00000399494 A0A1W2PQH9 124 aa29.95■■■□□ 2.39
HMGB1-205ENST00000399494 ZBTB24O43167 697 aaPredicted RBP29.95■■■□□ 2.39
HMGB1-205ENST00000399494 GNA14O95837 355 aa29.95■■■□□ 2.39
HMGB1-205ENST00000399494 RARGP13631 454 aa29.95■■■□□ 2.39
HMGB1-205ENST00000399494 GFPT1Q06210 699 aaPredicted RBP29.95■■■□□ 2.39
HMGB1-205ENST00000399494 Q6ZNB5 142 aa29.95■■■□□ 2.39
HMGB1-205ENST00000399494 GATA6Q92908 595 aa29.95■■■□□ 2.39
HMGB1-205ENST00000399494 JAKMIP2Q96AA8 810 aa29.95■■■□□ 2.39
HMGB1-205ENST00000399494 APOBEC3GQ9HC16 384 aaKnown RBP29.95■■■□□ 2.39
HMGB1-205ENST00000399494 PNPLA8Q9NP80 782 aa29.95■■■□□ 2.39
HMGB1-205ENST00000399494 DNMT3LQ9UJW3 386 aa29.95■■■□□ 2.39
HMGB1-205ENST00000399494 FBXO10Q9UK96 956 aa29.95■■■□□ 2.39
HMGB1-205ENST00000399494 RALYQ9UKM9 306 aaKnown RBP29.95■■■□□ 2.39
HMGB1-205ENST00000399494 MDM4O15151 490 aa29.94■■■□□ 2.38
HMGB1-205ENST00000399494 DGKGP49619 791 aa29.94■■■□□ 2.38
HMGB1-205ENST00000399494 TPD52L1Q16890 204 aaPredicted RBP29.94■■■□□ 2.38
HMGB1-205ENST00000399494 DPCR1Q3MIW9 517 aa29.94■■■□□ 2.38
HMGB1-205ENST00000399494 ZNF276Q8N554 614 aa29.94■■■□□ 2.38
HMGB1-205ENST00000399494 FBXL13Q8NEE6 735 aa29.94■■■□□ 2.38
HMGB1-205ENST00000399494 ERLEC1Q96DZ1 483 aa29.94■■■□□ 2.38
HMGB1-205ENST00000399494 GTPBP2Q9BX10 602 aaKnown RBP29.94■■■□□ 2.38
HMGB1-205ENST00000399494 NT5C1AQ9BXI3 368 aa29.94■■■□□ 2.38
HMGB1-205ENST00000399494 CYP3A43Q9HB55 503 aa29.94■■■□□ 2.38
HMGB1-205ENST00000399494 CYP8B1Q9UNU6 501 aa29.94■■■□□ 2.38
HMGB1-205ENST00000399494 PCNX2A6NKB5 2137 aa29.93■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms