RNA–Protein interactions for RNA: ENST00000394963.8

SMARCD1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD1, Length 3,658 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-202ENST00000394963 ZC3H4Q9UPT8 1303 aaKnown RBP16.47■□□□□ 0.23
SMARCD1-202ENST00000394963 TRIM49D1C9J1S8 452 aa16.47■□□□□ 0.23
SMARCD1-202ENST00000394963 COPEO14579 308 aa16.47■□□□□ 0.23
SMARCD1-202ENST00000394963 FAM107AO95990 144 aa16.47■□□□□ 0.23
SMARCD1-202ENST00000394963 IRF1P10914 325 aa16.47■□□□□ 0.23
SMARCD1-202ENST00000394963 ZNF132P52740 706 aa16.47■□□□□ 0.23
SMARCD1-202ENST00000394963 EFEMP1Q12805 493 aa16.47■□□□□ 0.23
SMARCD1-202ENST00000394963 RFX8Q6ZV50 586 aa16.47■□□□□ 0.23
SMARCD1-202ENST00000394963 RNF135Q8IUD6 432 aa16.47■□□□□ 0.23
SMARCD1-202ENST00000394963 GIPC2Q8TF65 315 aa16.47■□□□□ 0.23
SMARCD1-202ENST00000394963 TMEM209Q96SK2 561 aa16.47■□□□□ 0.23
SMARCD1-202ENST00000394963 NPHS2Q9NP85 383 aa16.47■□□□□ 0.23
SMARCD1-202ENST00000394963 ACSS2Q9NR19 701 aa16.47■□□□□ 0.23
SMARCD1-202ENST00000394963 SYDE1Q6ZW31 735 aaPredicted RBP16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 BBS12Q6ZW61 710 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 PLD5Q8N7P1 536 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 PCDH19Q8TAB3 1148 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 TFB1MQ8WVM0 346 aaKnown RBP16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 MYLPFQ96A32 169 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 SLC17A6Q9P2U8 582 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 A6NNZ2 444 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 VGLL3A8MV65 326 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 TMEM63AO94886 807 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 SUN1O94901 812 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 GRK4P32298 578 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 TUBB8Q3ZCM7 444 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 COLGALT1Q8NBJ5 622 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 SCLYQ96I15 445 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 SCYL1Q96KG9 808 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 SENP6Q9GZR1 1112 aaPredicted RBP16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 PRDM12Q9H4Q4 367 aa16.46■□□□□ 0.23
SMARCD1-202ENST00000394963 MSS51Q4VC12 460 aa16.46■□□□□ 0.22
SMARCD1-202ENST00000394963 CEP128Q6ZU80 1094 aa16.46■□□□□ 0.22
SMARCD1-202ENST00000394963 FUKQ8N0W3 1084 aa16.46■□□□□ 0.22
SMARCD1-202ENST00000394963 CPT1BQ92523 772 aa16.46■□□□□ 0.22
SMARCD1-202ENST00000394963 CAPNS2Q96L46 248 aa16.46■□□□□ 0.22
SMARCD1-202ENST00000394963 NRDE2Q9H7Z3 1164 aa16.46■□□□□ 0.22
SMARCD1-202ENST00000394963 GNEQ9Y223 722 aaKnown RBP16.46■□□□□ 0.22
SMARCD1-202ENST00000394963 NRP1O14786 923 aa16.45■□□□□ 0.22
SMARCD1-202ENST00000394963 ODC1P11926 461 aa16.45■□□□□ 0.22
SMARCD1-202ENST00000394963 HDAC4P56524 1084 aa16.45■□□□□ 0.22
SMARCD1-202ENST00000394963 TMPRSS15P98073 1019 aa16.45■□□□□ 0.22
SMARCD1-202ENST00000394963 LGSNQ5TDP6 509 aa16.45■□□□□ 0.22
SMARCD1-202ENST00000394963 UNC5BQ8IZJ1 945 aa16.45■□□□□ 0.22
SMARCD1-202ENST00000394963 SHCBP1LQ9BZQ2 653 aa16.45■□□□□ 0.22
SMARCD1-202ENST00000394963 DDX20Q9UHI6 824 aaKnown RBP16.45■□□□□ 0.22
SMARCD1-202ENST00000394963 MEFVO15553 781 aaPredicted RBP16.45■□□□□ 0.22
SMARCD1-202ENST00000394963 PDZD4Q76G19 769 aaPredicted RBP16.45■□□□□ 0.22
SMARCD1-202ENST00000394963 CDKL3Q8IVW4 592 aaPredicted RBP16.45■□□□□ 0.22
SMARCD1-202ENST00000394963 CYTH2Q99418 400 aa16.45■□□□□ 0.22
SMARCD1-202ENST00000394963 PAK5Q9P286 719 aa16.45■□□□□ 0.22
SMARCD1-202ENST00000394963 FAM47DPA6NHR8 397 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 ITGB1P05556 798 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 PYGBP11216 843 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 RPA3P35244 121 aaPredicted RBP16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 ACADSBP45954 432 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 SLC25A11Q02978 314 aaKnown RBP16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 MORF4L2Q15014 288 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 FYB2Q5VWT5 728 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 RYBPQ8N488 228 aaPredicted RBP16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 SMG8Q8ND04 991 aaKnown RBP16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 MPP6Q9NZW5 540 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 WDR27A2RRH5 827 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 ZBBXA8MT70 800 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 HOXD10P28358 340 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 STIP1P31948 543 aaKnown RBP16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 GATMP50440 423 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 ANKRD20A3Q5VUR7 823 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 FAM35AQ86V20 835 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 URGCPQ8TCY9 931 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 ATAD5Q96QE3 1844 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 TMEM88BA6NKF7 163 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 C9IYK1 514 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 TRDMT1O14717 391 aaKnown RBP16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 CA12O43570 354 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 DRG2P55039 364 aaKnown RBP16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 GJA9P57773 515 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 FAAP100Q0VG06 881 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 CTXN3Q4LDR2 81 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 TRNP1Q6NT89 227 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 LRRC52Q8N7C0 313 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 ARMC2Q8NEN0 867 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 EXT2Q93063 718 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 ZNF669Q96BR6 464 aaPredicted RBP16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 RNF208Q9H0X6 261 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 PSMC3IPQ9P2W1 217 aaPredicted RBP16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 RPS6KL1Q9Y6S9 549 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 COL1A2P08123 1366 aa16.44■□□□□ 0.22
SMARCD1-202ENST00000394963 RNF103O00237 685 aa16.43■□□□□ 0.22
SMARCD1-202ENST00000394963 LTFP02788 710 aa16.43■□□□□ 0.22
SMARCD1-202ENST00000394963 RPL17P18621 184 aaKnown RBP16.43■□□□□ 0.22
SMARCD1-202ENST00000394963 ADRA1DP25100 572 aa16.43■□□□□ 0.22
SMARCD1-202ENST00000394963 PSMB4P28070 264 aa16.43■□□□□ 0.22
SMARCD1-202ENST00000394963 C10orf120Q5SQS8 335 aa16.43■□□□□ 0.22
SMARCD1-202ENST00000394963 C17orf99Q6UX52 265 aa16.43■□□□□ 0.22
SMARCD1-202ENST00000394963 ZCCHC9Q8N567 271 aaKnown RBP16.43■□□□□ 0.22
SMARCD1-202ENST00000394963 ZNF512Q96ME7 567 aaPredicted RBP16.43■□□□□ 0.22
SMARCD1-202ENST00000394963 TSNARE1Q96NA8 513 aa16.43■□□□□ 0.22
SMARCD1-202ENST00000394963 TTC25Q96NG3 672 aa16.43■□□□□ 0.22
SMARCD1-202ENST00000394963 AAASQ9NRG9 546 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms