RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 MSLNQ13421 630 aaPredicted RBP18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 TAF5Q15542 800 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 MMEL1Q495T6 779 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 ERO1BQ86YB8 467 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 PDSS2Q86YH6 399 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 POU5F2Q8N7G0 328 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 PHF12Q96QT6 1004 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 ADAMTS6Q9UKP5 1117 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 hCG_1818297A0A087WSY0 165 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 A0A087WZ62 844 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 TCRBV7S3A2A0A539 114 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 PDE5AO76074 875 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 CYP2C8P10632 490 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 KRT3P12035 628 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 EIF4BP23588 611 aaKnown RBP18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 CDKN2BP42772 138 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 CDHR3Q6ZTQ4 885 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 STKLD1Q8NE28 680 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 FDXACB1Q9BRP7 624 aaPredicted RBP18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 MIS12Q9H081 205 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 RPF1Q9H9Y2 349 aaKnown RBP18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 IFT122Q9HBG6 1241 aa18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 ADARB2Q9NS39 739 aaKnown RBP18.33■□□□□ 0.52
SQSTM1-202ENST00000389805 LOC285556D6RIA3 1793 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 DNAJC25-GNG10A0A024R161 153 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 CAPN14A8MX76 684 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 FAM155BO75949 473 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 INSRRP14616 1297 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 VCLP18206 1134 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 PHBP35232 272 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 NRLP54845 237 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 PSMC1P62191 440 aaKnown RBP18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 PTK7Q13308 1070 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 TFDP3Q5H9I0 405 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 JADE1Q6IE81 842 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 IL1RAPL1Q9NZN1 696 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 AGTPBP1Q9UPW5 1226 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 B4GALT4O60513 344 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 VTNP04004 478 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 AQP5P55064 265 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 GDF10P55107 478 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 TMPRSS15P98073 1019 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 RALGPS1Q5JS13 557 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 RBM44Q6ZP01 1051 aaKnown RBP18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 ATP11CQ8NB49 1132 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 C2orf40Q9H1Z8 148 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 TBC1D30Q9Y2I9 924 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 DNAH12Q6ZR08 3092 aa18.32■□□□□ 0.52
SQSTM1-202ENST00000389805 CYB561D2O14569 222 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 LRCH4O75427 683 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 FAM163BP0C2L3 166 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 STAG3L1P0CL83 205 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 ETV4P43268 484 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 TMED1Q13445 227 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 PIGHQ14442 188 aaPredicted RBP18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 RAB6CQ53S08 254 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 ZNF667Q5HYK9 610 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 DHDDSQ86SQ9 333 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 RBM12BQ8IXT5 1001 aaKnown RBP18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 GDPD5Q8WTR4 605 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 PPP1R13LQ8WUF5 828 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 RAB6CQ9H0N0 254 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 SMARCAD1Q9H4L7 1026 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 S100A14Q9HCY8 104 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 TAGLN3Q9UI15 199 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 PCDHGC3Q9UN70 934 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 SLC25A27O95847 323 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 ERBB2P04626 1255 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 C6orf222P0C671 652 aaPredicted RBP18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 UQCRBP14927 111 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 PDK3Q15120 406 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 CCDC142Q17RM4 750 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 UBA3Q8TBC4 463 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 EBF4Q9BQW3 602 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 IQCGQ9H095 443 aaKnown RBP18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 CYP4F11Q9HBI6 524 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 SSU72Q9NP77 194 aaKnown RBP18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 IKBKGQ9Y6K9 419 aa18.31■□□□□ 0.52
SQSTM1-202ENST00000389805 C3orf70A6NLC5 250 aaPredicted RBP18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 TGDSO95455 350 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 ATP6V1B1P15313 513 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 CDH5P33151 784 aaPredicted RBP18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 MAGEA10P43363 369 aaPredicted RBP18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 BST1Q10588 318 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 TRIP10Q15642 601 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 GRAMD1BQ3KR37 738 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 CES4AQ5XG92 561 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 FAM172AQ8WUF8 416 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 GCNAQ96QF7 691 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 SLC13A1Q9BZW2 595 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 ELOVL4Q9GZR5 314 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 ACSS3Q9H6R3 686 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 SERPINB6P35237 376 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 SURF1Q15526 300 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 OASLQ15646 514 aaKnown RBP18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 SH3PXD2AQ5TCZ1 1133 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 DPY19L2Q6NUT2 758 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 FBXL19Q6PCT2 694 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 ANKRD13AQ8IZ07 590 aa18.3■□□□□ 0.52
SQSTM1-202ENST00000389805 SLC4A11Q8NBS3 891 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms