RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 SLC22A23A1A5C7 686 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 MAGEA13PA6NCF6 341 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 IQCA1LA6NCM1 817 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 PMS2P5A8MQ11 134 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 RSPH10B2B2RC85 870 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 NR5A2O00482 541 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 KCNJ13O60928 360 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 NPTXRO95502 500 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 IGLV1-44P01699 117 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 TUBBP07437 444 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 RSPH10BP0C881 870 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 APEHP13798 732 aaKnown RBP-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 TUBB4BP68371 445 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 GABREP78334 506 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 TRAF3Q13114 568 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 SLC14A1Q13336 389 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 GPR18Q14330 331 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 C6orf10Q5SRN2 563 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 DCAF12L1Q5VU92 463 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 SFRP4Q6FHJ7 346 aaPredicted RBP-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 FAM180AQ6UWF9 173 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 USP49Q70CQ1 688 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 SIRT6Q8N6T7 355 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 LSM14AQ8ND56 463 aaKnown RBP-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 OR14A16Q8NHC5 309 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 STAG1Q8WVM7 1258 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 RADILQ96JH8 1075 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 TM2D2Q9BX73 214 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 RGS17Q9UGC6 210 aaPredicted RBP-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 SERTAD3Q9UJW9 196 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 PPP2R3BQ9Y5P8 575 aa-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 NSD1Q96L73 2696 aaPredicted RBP-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 ASH1LQ9NR48 2969 aaKnown RBP-0.24□□□□□ -2.45
RNU6-540P-201ENST00000384622 RIF1Q5UIP0 2472 aaKnown RBP-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 SETD2Q9BYW2 2564 aaPredicted RBP-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 MDM4O15151 490 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 KIF20AO95235 890 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 CETPP11597 493 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 TRIM27P14373 513 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 ARSBP15848 533 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 ATF7P17544 494 aaPredicted RBP-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 CD40P25942 277 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 RBMXP38159 391 aaKnown RBP-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 RFX5P48382 616 aaPredicted RBP-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 CLCN3P51790 818 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 TRAF1Q13077 416 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 MRPL58Q14197 206 aaKnown RBP-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 GJC2Q5T442 439 aaPredicted RBP-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 UNQ6126/PRO20091Q6UXV3 157 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 KYAT3Q6YP21 454 aaKnown RBP-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 TUBA1AQ71U36 451 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 LYSMD2Q8IV50 215 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 SLC41A1Q8IVJ1 513 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 OR2L2Q8NH16 312 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 ATG4AQ8WYN0 398 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 HERVK_113Q902F9 699 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 PIGKQ92643 395 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 DPF2Q92785 391 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 ANAPC16Q96DE5 110 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 MOCOSQ96EN8 888 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 ORAI3Q9BRQ5 295 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 MCRIP2Q9BUT9 160 aaKnown RBP-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 SELENOOQ9BVL4 669 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 RTN4RQ9BZR6 473 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 NUAK2Q9H093 628 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 C11orf54Q9H0W9 315 aaPredicted RBP-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 GAREM1Q9H706 876 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 MSRAQ9UJ68 235 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 TMPRSS11EQ9UL52 423 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 RAD54BQ9Y620 910 aa-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 SYNE1Q8NF91 8797 aaKnown RBP-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 TEP1Q99973 2627 aaKnown RBP-0.25□□□□□ -2.45
RNU6-540P-201ENST00000384622 ABCA2Q9BZC7 2435 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 USH2AO75445 5202 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 GAKO14976 1311 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 ZNF335Q9H4Z2 1342 aaPredicted RBP-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 KIR2DS5A0A0G2JLQ3 304 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 PTPDC1A2A3K4 754 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 H0Y9J4 135 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 KIR2DS3K7RE56 304 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 CBX4O00257 560 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 CLIC1O00299 241 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 CES2O00748 559 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 GPR32O75388 356 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 ZNF821O75541 412 aaPredicted RBP-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 NTSR2O95665 410 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 HOXC4P09017 264 aaPredicted RBP-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 C6orf222P0C671 652 aaPredicted RBP-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 CHRM3P20309 590 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 LPOP22079 712 aaPredicted RBP-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 GYS2P54840 703 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 FXNQ16595 210 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 CYP1B1Q16678 543 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 MINDY4Q4G0A6 757 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 FSCBQ5H9T9 825 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 ASPHD2Q6ICH7 369 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 NOTCH2NLQ7Z3S9 236 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 HPS6Q86YV9 775 aa-0.26□□□□□ -2.45
RNU6-540P-201ENST00000384622 CIARTQ8N365 385 aaPredicted RBP-0.26□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms