RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 PHLDB2Q86SQ0 1253 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 TAC4Q86UU9 113 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 C12orf40Q86WS4 652 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 XYLT1Q86Y38 959 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 TMEM25Q86YD3 366 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 DENND1CQ8IV53 801 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 DEFB106AQ8N104 65 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 SLC30A5Q8TAD4 765 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 CPLX3Q8WVH0 158 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 C18orf8Q96DM3 657 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 AGPAT1Q99943 283 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 POPDC2Q9HBU9 364 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 SPHK2Q9NRA0 654 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 AGO1Q9UL18 857 aaKnown RBP13.95□□□□□ -0.18
VPS28-202ENST00000377348 MYO6Q9UM54 1294 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 MRPS17Q9Y2R5 130 aaKnown RBP13.95□□□□□ -0.18
VPS28-202ENST00000377348 HBS1LQ9Y450 684 aaKnown RBP13.95□□□□□ -0.18
VPS28-202ENST00000377348 MUC6Q6W4X9 2439 aa13.95□□□□□ -0.18
VPS28-202ENST00000377348 CHRNB1P11230 501 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 ADH5P11766 374 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 UNGP13051 313 aaPredicted RBP13.94□□□□□ -0.18
VPS28-202ENST00000377348 COL9A1P20849 921 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 OPRD1P41143 372 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 SLC6A11P48066 632 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 GALK1P51570 392 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 MESP2Q0VG99 397 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 TRIP4Q15650 581 aaPredicted RBP13.94□□□□□ -0.18
VPS28-202ENST00000377348 DCAF6Q58WW2 860 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 FIGNQ5HY92 759 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 EFHC1Q5JVL4 640 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 SFMBT2Q5VUG0 894 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 FSTL4Q6MZW2 842 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 TRIM72Q6ZMU5 477 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 MMS22LQ6ZRQ5 1243 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 GAS2L3Q86XJ1 694 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 NAT16Q8N8M0 369 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 OLIG1Q8TAK6 271 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 BHMTQ93088 406 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 PLD4Q96BZ4 506 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 OTUB2Q96DC9 234 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 P2RY11Q96G91 374 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 SLC2A13Q96QE2 648 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 NELL2Q99435 816 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 C11orf70Q9BRQ4 267 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 OSBPL6Q9BZF3 934 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 DCLK3Q9C098 648 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 LMAN1LQ9HAT1 526 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 ASNSD1Q9NWL6 643 aa13.94□□□□□ -0.18
VPS28-202ENST00000377348 GOLGA8SH3BPF8 625 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 TRDMT1O14717 391 aaKnown RBP13.93□□□□□ -0.18
VPS28-202ENST00000377348 AP5Z1O43299 807 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 CBFA2T2O43439 604 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 HSF2BPO75031 334 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 DAB1O75553 588 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 ADH1CP00326 375 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 EGFP01133 1207 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 GYPCP04921 128 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 GLI1P08151 1106 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 SKILP12757 684 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 TBX4P57082 545 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 SNX16P57768 344 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 RNASE9P60153 205 aaKnown RBP13.93□□□□□ -0.18
VPS28-202ENST00000377348 CLEC16AQ2KHT3 1053 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 ANO4Q32M45 955 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 TMEM196Q5HYL7 178 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 FAM102AQ5T9C2 384 aaPredicted RBP13.93□□□□□ -0.18
VPS28-202ENST00000377348 C1orf228Q6PIY5 440 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 Q6ZS52 159 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 TOGARAM2Q6ZUX3 1019 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 BEND5Q7L4P6 421 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 SLC26A9Q7LBE3 791 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 DTWD2Q8NBA8 298 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 EZH1Q92800 747 aaPredicted RBP13.93□□□□□ -0.18
VPS28-202ENST00000377348 CD101Q93033 1021 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 CLDN23Q96B33 292 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 SERPINB11Q96P15 392 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 P2RY13Q9BPV8 354 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 SYT11Q9BT88 431 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 NUP58Q9BVL2 599 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 EDEM3Q9BZQ6 932 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 RBSNQ9H1K0 784 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 HAUS4Q9H6D7 363 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 AIPL1Q9NZN9 384 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 MYOFQ9NZM1 2061 aa13.93□□□□□ -0.18
VPS28-202ENST00000377348 MIA3Q5JRA6 1907 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 SYNJ2BP-COX16A0A087WUM0 186 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 A0A1W2PQJ5 194 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 ANTXRLA6NF34 631 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 NEDD8-MDP1E9PL57 170 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 TRIM24O15164 1050 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 NCAM2O15394 837 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 GJB6O95452 261 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 TRUB2O95900 331 aaKnown RBP13.92□□□□□ -0.18
VPS28-202ENST00000377348 IGLV3-27P01718 113 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 TPM3P06753 285 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 CCDC172P0C7W6 258 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 MMP8P22894 467 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 HARS2P49590 506 aaKnown RBP13.92□□□□□ -0.18
VPS28-202ENST00000377348 AMPD2Q01433 879 aa13.92□□□□□ -0.18
VPS28-202ENST00000377348 CENPCQ03188 943 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms