RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 ISCUQ9H1K1 167 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 PCM1Q15154 2024 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 TAF4O00268 1085 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 GLP2RO95838 553 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 YY1P25490 414 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 OXCT1P55809 520 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 ATP1A4Q13733 1029 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 STRIP1Q5VSL9 837 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 HOMEZQ8IX15 550 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 APBB2Q92870 758 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 ATAD3AQ9NVI7 634 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 DUSP12Q9UNI6 340 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 TBKBP1A7MCY6 615 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 TPP2P29144 1249 aaPredicted RBP12.8□□□□□ -0.36
VPS13A-204ENST00000376634 COILP38432 576 aaPredicted RBP12.8□□□□□ -0.36
VPS13A-204ENST00000376634 KPNA1P52294 538 aaPredicted RBP12.8□□□□□ -0.36
VPS13A-204ENST00000376634 NFYCQ13952 458 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 XRRA1Q6P2D8 792 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 AHCYL2Q96HN2 611 aaKnown RBP12.8□□□□□ -0.36
VPS13A-204ENST00000376634 MAGED4Q96JG8 741 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 MLPHQ9BV36 600 aaPredicted RBP12.8□□□□□ -0.36
VPS13A-204ENST00000376634 OXCT2Q9BYC2 517 aaPredicted RBP12.8□□□□□ -0.36
VPS13A-204ENST00000376634 VAV1P15498 845 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 ITGA9Q13797 1035 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 RPRD1AQ96P16 312 aaPredicted RBP12.8□□□□□ -0.36
VPS13A-204ENST00000376634 PIF1Q9H611 641 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 TRIM66O15016 1216 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 TBX3O15119 743 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 EPHB3P54753 998 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 GATAD2AQ86YP4 633 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 SRBD1Q8N5C6 995 aaKnown RBP12.8□□□□□ -0.36
VPS13A-204ENST00000376634 ZFRQ96KR1 1074 aaKnown RBP12.8□□□□□ -0.36
VPS13A-204ENST00000376634 AGPAT5Q9NUQ2 364 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 MTMR4Q9NYA4 1195 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 NUP214P35658 2090 aaPredicted RBP12.8□□□□□ -0.36
VPS13A-204ENST00000376634 BTN3A3O00478 584 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 S100GP29377 79 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 SP8Q8IXZ3 490 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 ADGRF2Q8IZF7 708 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 TPCN2Q8NHX9 752 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 ZCCHC2Q9C0B9 1178 aaKnown RBP12.8□□□□□ -0.36
VPS13A-204ENST00000376634 PNMA8CA0A1B0GUJ8 204 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 RGS20O76081 388 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 MAPK9P45984 424 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 PRKAA1Q13131 559 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 NR6A1Q15406 480 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 TRMT5Q32P41 509 aaKnown RBP12.8□□□□□ -0.36
VPS13A-204ENST00000376634 AKIRIN2Q53H80 203 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 YME1L1Q96TA2 773 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 COLEC11Q9BWP8 271 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 H3BN98 237 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 MYL12BO14950 172 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 ZC3H11AO75152 810 aaKnown RBP eCLIP12.8□□□□□ -0.36
VPS13A-204ENST00000376634 NFIAQ12857 509 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 NR1I3Q14994 352 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 HLA-DQA1Q5Y7H0 255 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 FIG4Q92562 907 aa12.8□□□□□ -0.36
VPS13A-204ENST00000376634 GSG1L2A8MUP6 293 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 MED26O95402 600 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 CPSF4O95639 269 aaKnown RBP12.79□□□□□ -0.36
VPS13A-204ENST00000376634 HSD17B3P37058 310 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 CCT3P49368 545 aaKnown RBP12.79□□□□□ -0.36
VPS13A-204ENST00000376634 MRPS31Q92665 395 aaKnown RBP12.79□□□□□ -0.36
VPS13A-204ENST00000376634 SAE1Q9UBE0 346 aaPredicted RBP12.79□□□□□ -0.36
VPS13A-204ENST00000376634 AFF2P51816 1311 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 TNS3Q68CZ2 1445 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 FAM20BO75063 409 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 GNA13Q14344 377 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 ZNF57Q68EA5 555 aaPredicted RBP12.79□□□□□ -0.36
VPS13A-204ENST00000376634 TMEM132CQ8N3T6 1108 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 CYP4F12Q9HCS2 524 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 ALKQ9UM73 1620 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 AP3D1O14617 1153 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 HBP1O60381 514 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 STIP1P31948 543 aaKnown RBP12.79□□□□□ -0.36
VPS13A-204ENST00000376634 NMD3Q96D46 503 aaKnown RBP12.79□□□□□ -0.36
VPS13A-204ENST00000376634 C1QTNF7Q9BXJ2 289 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 PCDH8O95206 1070 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 RCVRNP35243 200 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 IL5RAQ01344 420 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 MAD2L1Q13257 205 aaPredicted RBP12.79□□□□□ -0.36
VPS13A-204ENST00000376634 DCTN2Q13561 401 aaKnown RBP12.79□□□□□ -0.36
VPS13A-204ENST00000376634 ZC2HC1CQ53FD0 456 aaPredicted RBP12.79□□□□□ -0.36
VPS13A-204ENST00000376634 KYQ8NBH2 561 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 SEPT1Q8WYJ6 367 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 ACTR8Q9H981 624 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 LRRC40Q9H9A6 602 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 NT5MQ9NPB1 228 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 TRIM10Q9UDY6 481 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 SLCO1B7G3V0H7 640 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 TPBGLP0DKB5 382 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 MAPK7Q13164 816 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 ITIH5Q86UX2 942 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 FAM228AQ86W67 206 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 MIEF2Q96C03 454 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 TRIM39Q9HCM9 518 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 ZNF112Q9UJU3 913 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 PXDNLA1KZ92 1463 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 FBXO21O94952 628 aa12.79□□□□□ -0.36
VPS13A-204ENST00000376634 MFN2O95140 757 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms