RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 DEFB128Q7Z7B8 93 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PRUNE1Q86TP1 453 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 EFCAB3Q8N7B9 438 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ATG16L2Q8NAA4 619 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PIK3C3Q8NEB9 887 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 CNKSR1Q969H4 720 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 MYLPFQ96A32 169 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 RCN3Q96D15 328 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 JMJD4Q9H9V9 463 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 HCN3Q9P1Z3 774 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 CHORDC1Q9UHD1 332 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ACAD8Q9UKU7 415 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PCDHGB5Q9Y5G0 923 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 SAR1BQ9Y6B6 198 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 FAM155AB1AL88 458 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 MYBL1P10243 752 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PABPC1P11940 636 aaKnown RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 MYL4P12829 197 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 CFL1P23528 166 aaKnown RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 MAGEA6P43360 314 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 MAGEA12P43365 314 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 FNTAP49354 379 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 RWDD2BP57060 319 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 CARD16Q5EG05 197 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF667Q5HYK9 610 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 FGD3Q5JSP0 725 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 DDX59Q5T1V6 619 aaKnown RBP eCLIP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF613Q6PF04 617 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 SSX6Q7RTT6 188 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 LIX1Q8N485 282 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 TCEANCQ8N8B7 351 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 OR6J1Q8NGC5 347 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 S100ZQ8WXG8 99 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 EME1Q96AY2 570 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 C1QTNF7Q9BXJ2 289 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 AMNQ9BXJ7 453 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 FANCFQ9NPI8 374 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 CHST12Q9NRB3 414 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 BSDC1Q9NW68 430 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PCSK1NQ9UHG2 260 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 KCNIP3Q9Y2W7 256 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 NFE2L3Q9Y4A8 694 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 COL4A3BPQ9Y5P4 624 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PIK3R4Q99570 1358 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 FAM220BPB1ANY3 271 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 TGM1P22735 817 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 CASP1P29466 404 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PRKAR1BP31321 381 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 OAZ1P54368 228 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 HNRNPH2P55795 449 aaKnown RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ACOX1Q15067 660 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 NECAB2Q7Z6G3 386 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 SATL1Q86VE3 508 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 CCDC36Q8IYA8 594 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 DHRSXQ8N5I4 330 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PPM1NQ8N819 430 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 SLC4A11Q8NBS3 891 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 KCNB2Q92953 911 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PSKH2Q96QS6 385 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 WDR24Q96S15 920 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 STRBPQ96SI9 672 aaKnown RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 MRPL1Q9BYD6 325 aaKnown RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 HMG20AQ9NP66 347 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 SLC39A2Q9NP94 309 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 SLC2A8Q9NY64 477 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PCDH10Q9P2E7 1040 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 HMGXB4Q9UGU5 601 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ZNF225Q9UK10 706 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 MTMR6Q9Y217 621 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PIN4Q9Y237 131 aaKnown RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PCDHB6Q9Y5E3 794 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PCYT1BQ9Y5K3 369 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 KANSL1LA0AUZ9 987 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 C9IYK1 514 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PTGES3LE9PB15 166 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 SH3BGRLO75368 114 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 TM7SF2O76062 418 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 IL33O95760 270 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 HRGP04196 525 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 KLRC2P26717 231 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 CD1BP29016 333 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 TYK2P29597 1187 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ALDH5A1P51649 535 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 GJA9P57773 515 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ERVK-9P63128 1117 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PTPAQ15257 358 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ZNHIT3Q15649 155 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 TMC4Q7Z404 712 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PLEKHM2Q8IWE5 1019 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 PRR22Q8IZ63 422 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ATPAF2Q8N5M1 289 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 RERGQ96A58 199 aaPredicted RBP4.76□□□□□ -1.65
SCN1A-202ENST00000375405 VPS33BQ9H267 617 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 NOD2Q9HC29 1040 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 SAYSD1Q9NPB0 183 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 VPS51Q9UID3 782 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 ARAP1Q96P48 1450 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 SPAG17Q6Q759 2223 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 FAM221BA6H8Z2 402 aa4.76□□□□□ -1.65
SCN1A-202ENST00000375405 M0R129 80 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms