RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 C5orf58C9J3I9 102 aa16.36■□□□□ 0.21
COL17A1-202ENST00000369733 F8VP50 259 aa16.36■□□□□ 0.21
COL17A1-202ENST00000369733 MGAT1P26572 445 aa16.36■□□□□ 0.21
COL17A1-202ENST00000369733 TRIM69Q86WT6 500 aa16.36■□□□□ 0.21
COL17A1-202ENST00000369733 ZNF483Q8TF39 744 aaPredicted RBP16.36■□□□□ 0.21
COL17A1-202ENST00000369733 OSBPL7Q9BZF2 842 aa16.36■□□□□ 0.21
COL17A1-202ENST00000369733 TRIM45Q9H8W5 580 aaPredicted RBP16.36■□□□□ 0.21
COL17A1-202ENST00000369733 TISP43B9A030 160 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 ABLIM1O14639 778 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 EDF1O60869 148 aaKnown RBP16.35■□□□□ 0.21
COL17A1-202ENST00000369733 LCA5LO95447 670 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 TMEM62Q0P6H9 643 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 FASTKQ14296 549 aaKnown RBP16.35■□□□□ 0.21
COL17A1-202ENST00000369733 OTOAQ7RTW8 1153 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 FAM131BQ86XD5 332 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 ALLCQ8N6M5 410 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 FAM81AQ8TBF8 368 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 SLITRK1Q96PX8 696 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 WDCPQ9H6R7 721 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 PIH1D1Q9NWS0 290 aaKnown RBP16.35■□□□□ 0.21
COL17A1-202ENST00000369733 A0A096LPK6 155 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 SMIM31A0A1B0GVY4 71 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 APOC4-APOC2K7ER74 178 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 APOC2P02655 101 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 LRRC74AQ0VAA2 488 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 TJAP1Q5JTD0 557 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 RNF219Q5W0B1 726 aaPredicted RBP16.35■□□□□ 0.21
COL17A1-202ENST00000369733 FAM13CQ8NE31 585 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 PIWIL2Q8TC59 973 aaKnown RBP16.35■□□□□ 0.21
COL17A1-202ENST00000369733 OTUD5Q96G74 571 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 CPNE1Q99829 537 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 EIF3LQ9Y262 564 aaKnown RBP16.35■□□□□ 0.21
COL17A1-202ENST00000369733 PRPF4O43172 522 aaKnown RBP eCLIP16.35■□□□□ 0.21
COL17A1-202ENST00000369733 NPTXRO95502 500 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 BNIP1Q12981 228 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 CSTF3Q12996 717 aaKnown RBP16.35■□□□□ 0.21
COL17A1-202ENST00000369733 NRF1Q16656 503 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 DLG3Q92796 817 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 HAS1Q92839 578 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 APOL5Q9BWW9 433 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 TMEM39BQ9GZU3 492 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 NEUROG2Q9H2A3 272 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 ERVK-5Q9HDB9 667 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 RNF103O00237 685 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 RGS5O15539 181 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 PHGDHO43175 533 aaKnown RBP16.35■□□□□ 0.21
COL17A1-202ENST00000369733 HBP1O60381 514 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 SERPINI2O75830 405 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 HMBSP08397 361 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 CDK7P50613 346 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 CDC42EP1Q00587 391 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 RAD51Q06609 339 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 NFIL3Q16649 462 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 PTRHD1Q6GMV3 140 aaKnown RBP16.35■□□□□ 0.21
COL17A1-202ENST00000369733 HEATR4Q86WZ0 1026 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 ALG3Q92685 438 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 MRPS26Q9BYN8 205 aaKnown RBP16.35■□□□□ 0.21
COL17A1-202ENST00000369733 PREX1Q8TCU6 1659 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 BANF1O75531 89 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 SUPT20HL2P0C7V6 817 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 RPL5P46777 297 aaKnown RBP16.35■□□□□ 0.21
COL17A1-202ENST00000369733 RGS4P49798 205 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 SNX31Q8N9S9 440 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 SEPHS2Q99611 448 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 EPS8L2Q9H6S3 715 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 GPAMQ9HCL2 828 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 SAE1Q9UBE0 346 aaPredicted RBP16.35■□□□□ 0.21
COL17A1-202ENST00000369733 RABGEF1Q9UJ41 708 aa16.35■□□□□ 0.21
COL17A1-202ENST00000369733 DRG1Q9Y295 367 aaKnown RBP16.35■□□□□ 0.21
COL17A1-202ENST00000369733 MRASO14807 208 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 SOX6P35712 828 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 ZNF268Q14587 947 aaPredicted RBP16.34■□□□□ 0.21
COL17A1-202ENST00000369733 ERO1BQ86YB8 467 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 CEP41Q9BYV8 373 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 PIF1Q9H611 641 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 C19orf81C9J6K1 198 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 GAS2O43903 313 aaKnown RBP16.34■□□□□ 0.21
COL17A1-202ENST00000369733 BAIAP3O94812 1187 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 DDHD2O94830 711 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 ETS2P15036 469 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 ATP6AP1LQ52LC2 224 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 HGSNATQ68CP4 663 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 TRABD2AQ86V40 505 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 CFAP99D6REC4 459 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 CALCAP01258 141 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 CCNHP51946 323 aaPredicted RBP16.34■□□□□ 0.21
COL17A1-202ENST00000369733 PRKAA2P54646 552 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 MAMLD1Q13495 774 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 MRNIPQ6NTE8 343 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 C1orf186Q6ZWK4 172 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 ZCCHC7Q8N3Z6 543 aaKnown RBP16.34■□□□□ 0.21
COL17A1-202ENST00000369733 URGCPQ8TCY9 931 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 IMPAD1Q9NX62 359 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 GGA3Q9NZ52 723 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 CASZ1Q86V15 1759 aa16.34■□□□□ 0.21
COL17A1-202ENST00000369733 BAZ2BQ9UIF8 2168 aaKnown RBP16.34■□□□□ 0.21
COL17A1-202ENST00000369733 NCF1BA6NI72 391 aaPredicted RBP16.34■□□□□ 0.21
COL17A1-202ENST00000369733 NCF1CA8MVU1 366 aaPredicted RBP16.34■□□□□ 0.21
COL17A1-202ENST00000369733 NCF1P14598 390 aaPredicted RBP16.34■□□□□ 0.21
COL17A1-202ENST00000369733 CPB1P15086 417 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms