RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 SP100P23497 879 aaPredicted RBP9.54□□□□□ -0.88
UPF2-202ENST00000357604 LMO2P25791 158 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 ITGB8P26012 769 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 MATKP42679 507 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 KLK7P49862 253 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 BSPRYQ5W0U4 402 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 ANKS1BQ7Z6G8 1248 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 CTAGE6Q86UF2 777 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 CTAGE4Q8IX94 777 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 SRPK1Q96SB4 655 aaKnown RBP9.54□□□□□ -0.88
UPF2-202ENST00000357604 SPTLC3Q9NUV7 552 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 CHORDC1Q9UHD1 332 aaPredicted RBP9.54□□□□□ -0.88
UPF2-202ENST00000357604 SIX4Q9UIU6 781 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 ANAPC5Q9UJX4 755 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 SIK3Q9Y2K2 1263 aa9.54□□□□□ -0.88
UPF2-202ENST00000357604 ZW10O43264 779 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 BNIP3LO60238 219 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 GRAP2O75791 330 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 TRUB2O95900 331 aaKnown RBP9.53□□□□□ -0.88
UPF2-202ENST00000357604 CORO1AP31146 461 aaKnown RBP9.53□□□□□ -0.88
UPF2-202ENST00000357604 EPHB4P54760 987 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 UBXN2BQ14CS0 331 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 PHLDB3Q6NSJ2 640 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 ZNF852Q6ZMS4 543 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 SH3RF2Q8TEC5 729 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 C2orf49Q9BVC5 232 aaPredicted RBP9.53□□□□□ -0.88
UPF2-202ENST00000357604 CIPCQ9C0C6 399 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 RAD18Q9NS91 495 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 PPEF2O14830 753 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 URI1O94763 535 aaPredicted RBP9.53□□□□□ -0.88
UPF2-202ENST00000357604 ZRANB2O95218 330 aaKnown RBP eCLIP9.53□□□□□ -0.88
UPF2-202ENST00000357604 PRKCIP41743 596 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 DPP6P42658 865 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 FAM171BQ6P995 826 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 CMTM8Q8IZV2 173 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 RXFP2Q8WXD0 754 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 TSSK1BQ9BXA7 367 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 HAPLN2Q9GZV7 340 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 UTP11Q9Y3A2 253 aaKnown RBP9.53□□□□□ -0.88
UPF2-202ENST00000357604 USP15Q9Y4E8 981 aaPredicted RBP9.53□□□□□ -0.88
UPF2-202ENST00000357604 E2F8A0AVK6 867 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 CFAP69A5D8W1 941 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 KCNK3O14649 394 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 CBX2Q14781 532 aaPredicted RBP9.53□□□□□ -0.88
UPF2-202ENST00000357604 ERAP2Q6P179 960 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 ZC3H14Q6PJT7 736 aaKnown RBP9.53□□□□□ -0.88
UPF2-202ENST00000357604 CLEC20AQ6ZU45 233 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 GPR152Q8TDT2 470 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 GOLGA6L10A6NI86 522 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 LILRB3O75022 631 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 CLDN11O75508 207 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 TADA3O75528 432 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 ARL14EPQ8N8R7 260 aaPredicted RBP9.53□□□□□ -0.88
UPF2-202ENST00000357604 ZYG11BQ9C0D3 744 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 APOBEC3GQ9HC16 384 aaKnown RBP9.53□□□□□ -0.88
UPF2-202ENST00000357604 AP4E1Q9UPM8 1137 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 TLR6Q9Y2C9 796 aa9.53□□□□□ -0.88
UPF2-202ENST00000357604 NEDD8-MDP1E9PL57 170 aa9.52□□□□□ -0.88
UPF2-202ENST00000357604 GALCP54803 685 aa9.52□□□□□ -0.88
UPF2-202ENST00000357604 GRIN2CQ14957 1233 aa9.52□□□□□ -0.88
UPF2-202ENST00000357604 LEXMQ3ZCV2 418 aa9.52□□□□□ -0.88
UPF2-202ENST00000357604 HEATR6Q6AI08 1181 aaKnown RBP9.52□□□□□ -0.88
UPF2-202ENST00000357604 CCDC105Q8IYK2 499 aa9.52□□□□□ -0.88
UPF2-202ENST00000357604 SLC35G2Q8TBE7 412 aa9.52□□□□□ -0.88
UPF2-202ENST00000357604 PNKPQ96T60 521 aa9.52□□□□□ -0.88
UPF2-202ENST00000357604 SCUBE2Q9NQ36 999 aa9.52□□□□□ -0.88
UPF2-202ENST00000357604 WDR27A2RRH5 827 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 ACSL4O60488 711 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 TSPAN3O60637 253 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 CYP2A6P11509 494 aaPredicted RBP9.52□□□□□ -0.89
UPF2-202ENST00000357604 PSMC3P17980 439 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 CES1P23141 567 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 FXR1P51114 621 aaKnown RBP eCLIP9.52□□□□□ -0.89
UPF2-202ENST00000357604 ZNF143P52747 638 aaPredicted RBP9.52□□□□□ -0.89
UPF2-202ENST00000357604 COPS2P61201 443 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 ADAM15Q13444 863 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 ARHGEF7Q14155 803 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 MTF1Q14872 753 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 TAOK1Q7L7X3 1001 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 NOP9Q86U38 636 aaKnown RBP9.52□□□□□ -0.89
UPF2-202ENST00000357604 ZSCAN30Q86W11 494 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 SCUBE3Q8IX30 993 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 SCML4Q8N228 414 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 LRRC15Q8TF66 581 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 PRRX2Q99811 253 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 MAGEB5Q9BZ81 275 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 KLHL8Q9P2G9 620 aaPredicted RBP9.52□□□□□ -0.89
UPF2-202ENST00000357604 TXNDC16Q9P2K2 825 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 ATP2C2O75185 946 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 HOXD13P35453 343 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 CDH4P55283 916 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 SLC25A52Q3SY17 297 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 TPGS1Q6ZTW0 290 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 C12orf29Q8N999 325 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 RTP3Q9BQQ7 232 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 CLSTN3Q9BQT9 956 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 CCDC77Q9BR77 488 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 FSD1LQ9BXM9 530 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 RAB17Q9H0T7 212 aa9.52□□□□□ -0.89
UPF2-202ENST00000357604 SOWAHDA6NJG2 315 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms